BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1848.p
         (440 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980978|ref|YP_001352321.1| capsular polysaccharide biosynt...   523   e-150
gi|152980050|ref|YP_001353945.1| sugar transferases involved in ...   108   6e-25

>gi|152980978|ref|YP_001352321.1| capsular polysaccharide
           biosynthesis glycosyltransferase [Janthinobacterium sp.
           Marseille]
          Length = 467

 Score =  523 bits (1347), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 253/439 (57%), Positives = 329/439 (74%), Gaps = 2/439 (0%)

Query: 3   VAYLWVLVRLSHHIFNGDYWVLAIMAFFLSSYFFTEFHERRLRRNPRGPSSFAPVL-DWL 61
           +  L+++  +  H F+  + VLAI+ FF+SS  F+     R   +    S    +L  W 
Sbjct: 30  IGLLYLVSVMIGHGFSAQHVVLAILTFFISSTVFSWSDPWRDVSSRNFLSQLKSILLVWS 89

Query: 62  AVAAVLVVVAYICEFYQNLSMRAIFSWVVSTPIGLIISQHVQSRVMRDLHTKGEVSKAII 121
            V  +L+   Y+           +  W++ TP  L+ +Q +  +    L   G +   ++
Sbjct: 90  TVVILLLFFGYVAGLATLFGQHEVVLWLLLTPPVLLAAQIILQKASSGLRRTG-IRSVVL 148

Query: 122 IGVNPAALKLADRMEKYPSLMIKLMGFFDDRELNRQPPGTYTPLHGKMSDVAAYVRQNNI 181
           +GVN  ++KLA+R+++ P L +++ GFFDDR+++RQP     PL G MSD+ AYVRQNNI
Sbjct: 149 VGVNELSVKLAERVDENPDLRMEVSGFFDDRDVSRQPDEQRVPLLGSMSDIPAYVRQNNI 208

Query: 182 NMVYISMPISAQPRVLQMIDELQDTTASIYFIPDIYIFNLIQARFDYVGGMAVMAICETP 241
           N ++IS PISAQPR+ ++++ELQDTTASIYF+PDIY+F+LIQARFD V G+ V+AICE+P
Sbjct: 209 NTIFISQPISAQPRIRKLLNELQDTTASIYFLPDIYVFDLIQARFDSVAGLPVVAICESP 268

Query: 242 FTGTNNIVKRLSDLVLASGILLMLLPVMVVIAICVKLTSPGPIIFKQRRYGLDGEEIVVY 301
           FTG N+++KR SD+VLAS I LMLLPVM+ IAI +K  SPGP+IF+QRRYGLDGEEI+VY
Sbjct: 269 FTGINSMIKRGSDIVLASIIQLMLLPVMLGIAIAIKAGSPGPVIFRQRRYGLDGEEIIVY 328

Query: 302 KFRSMTVMEDGGKVTQATKGDMRLTKIGGFLRSSSLDELPQFFNVLQGRMSIVGPRPHAV 361
           KFRSMTV EDG +V QATK D R+T++G FLR +SLDELPQFFNVLQGRMSIVGPRPHAV
Sbjct: 329 KFRSMTVCEDGARVVQATKDDQRITRVGAFLRKTSLDELPQFFNVLQGRMSIVGPRPHAV 388

Query: 362 AHNELYRKQIKGYMLRHKVKPGITGWAQVNGLRGETETLDKMKARIEFDLEYLRRWSLVF 421
           AHNELYRKQIKGYMLRHKV+PGITGWAQVNGLRGET+TLDKM+ARI +DL+YL+RWSL  
Sbjct: 389 AHNELYRKQIKGYMLRHKVRPGITGWAQVNGLRGETDTLDKMEARIAYDLDYLKRWSLAL 448

Query: 422 DLWIIFQTVRMVIKRDNAY 440
           DLWII +T ++V+ RDNAY
Sbjct: 449 DLWIILRTFKVVLTRDNAY 467


>gi|152980050|ref|YP_001353945.1| sugar transferases involved in
           lipopolysaccharide synthesis [Janthinobacterium sp.
           Marseille]
          Length = 180

 Score =  108 bits (270), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 66/167 (39%), Positives = 92/167 (55%), Gaps = 7/167 (4%)

Query: 272 IAICVKLTSPGPIIFKQRRYGLDGEEIVVYKFRSMTVMEDGGKVTQATKGDMRLTKIGGF 331
           IA  VK+TS GP ++   R G   +   + KFR+M V          T     LT IG F
Sbjct: 18  IAFVVKITSKGPAVYWSDRVGKHNKIFKMPKFRTMQVDTPAVATHLLTDPQQFLTPIGSF 77

Query: 332 LRSSSLDELPQFFNVLQGRMSIVGPRPHAVAHNELYRKQIKGYMLRHKVKPGITGWAQVN 391
           LR SSLDELPQ +++L+G MS VGPRP     ++L    ++       +KPG+TGWAQ+N
Sbjct: 78  LRKSSLDELPQLWSILKGDMSFVGPRPALFNQDDLV--ALRTRFGVDNIKPGLTGWAQIN 135

Query: 392 GLRGETETLDKMKARIEFDLEYLRRWSLVFDLWIIFQTVRMVIKRDN 438
           G R E    +K    +  D+EYL+  S  FD+ I+  T + V+K+D 
Sbjct: 136 G-RDELPIPEK----VALDVEYLKLQSFWFDIKILVLTFQKVLKKDG 177


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.327    0.141    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 952,241
Number of extensions: 35561
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 2
Length of query: 440
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 354
Effective length of database: 903,079
Effective search space: 319689966
Effective search space used: 319689966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)