BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1847.p
         (396 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982471|ref|YP_001352320.1| hypothetical protein mma_0630 [...   277   1e-75

>gi|152982471|ref|YP_001352320.1| hypothetical protein mma_0630
           [Janthinobacterium sp. Marseille]
          Length = 400

 Score =  277 bits (708), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 152/401 (37%), Positives = 227/401 (56%), Gaps = 25/401 (6%)

Query: 2   CALLVSMTCPFAYAADPGQVVVPYVQYTYLHDDNLLRLSGPDAAQTAFGSPRLSDNVQSK 61
            A +  MTC  A A + G    PY  Y   +D NLLR S  DA + +    +LSD     
Sbjct: 19  LAFVGVMTCLPALAIE-GDTFTPYASYGIYYDANLLRQS--DAVRQS--GAQLSDRWTRA 73

Query: 62  QGGLRIDKTLSRQHILLDASVTKNTFDHFSQFDNDGRDLKADWGWVLGEHVSGNLGYVYS 121
             G+R+DK + RQ +  D S  +  +DHF+Q+ N G+D  A+W W LG   SGN+G  Y+
Sbjct: 74  GVGIRMDKEIGRQKLTADVSAYRADYDHFNQYSNTGKDGVANWKWALGNQFSGNVGVNYA 133

Query: 122 RSLTPFQNFRVLQANIRTMDTKYLNVAWQLHPDWAVHVQASKFGLAYDLLSQQSNNFTQN 181
           ++LTPF+++R L+ +++T    Y++ +W+ HP W ++   S + L YDL SQQ +  T +
Sbjct: 134 QALTPFEDYRSLERSMQTQTKTYVDGSWRFHPSWQLNTAYSHYDLDYDLASQQPSERTLD 193

Query: 182 IAEFGVDYTPRSGSTAGLQVRRTTGRYPFDSVIGTGTVNNSFVQEDYKAKIVWLYSDKTK 241
           I + GVDY  RSG+  G+ +R   G Y +  +       NS+ Q + KAK+ W  + KT 
Sbjct: 194 ITDVGVDYLARSGNKVGMVLRHIEGDYKYADI-------NSYSQNEVKAKVDWQITGKTL 246

Query: 242 LQFLGGVTQRE------RDAAAPGSGYRGLNARLIGDWAATAKTGFTANLWREIGGVNDI 295
           +QFLGG  +RE      RD+  P       +ARL   W AT KT  +   WRE+G  +++
Sbjct: 247 IQFLGGYAKREYAVNPQRDSGVP-------SARLTAYWKATNKTAVSLGAWRELGATDNL 299

Query: 296 DANFALTTGASLVASYQPTAKLRFDGLVDYEHRNYNGASIVTGVTPSTRRDNYEKATLSL 355
            AN+A   G SL +++  T+K+  DGLV  E R+YNG S++ G+ P  R D+Y  A L +
Sbjct: 300 AANYARNQGVSLASTWDATSKISVDGLVMTEKRSYNGVSVIAGLDPLNRSDDYRNALLGV 359

Query: 356 TYSPTTSLSLMLAVYRENLKSNINSFGYLSNGISLTSRYEF 396
           TY  T+   +  AV+R  L SNI S  Y ++G  +++RYEF
Sbjct: 360 TYKLTSHWRIRAAVFRTTLDSNIPSASYSTDGAHISTRYEF 400


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.133    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 927,478
Number of extensions: 37969
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 311
Effective length of database: 906,776
Effective search space: 282007336
Effective search space used: 282007336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)