BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1846.p
         (200 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982255|ref|YP_001352339.1| hypothetical protein mma_0649 [...    89   2e-19

>gi|152982255|ref|YP_001352339.1| hypothetical protein mma_0649
           [Janthinobacterium sp. Marseille]
          Length = 201

 Score = 89.0 bits (219), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/201 (38%), Positives = 112/201 (55%), Gaps = 12/201 (5%)

Query: 3   WHTITFLGDSTITIPGACILALWLAINRMWRPMFAWLAAFGMAMLIVVISKLLFMGWDIS 62
           W   T L D+  T+P A +LA+WLA  R WRP   W   FG  + +V  +K+ ++GW I 
Sbjct: 4   WLAFTKLADTNFTMPLALLLAVWLAAARAWRPALCWCLLFGGGIFLVAATKIAYVGWGIG 63

Query: 63  LPMLNFTGFSGHTASSSALY-LSLALLLTQQCSRGRRLLVLALTALVVTAVGTSRLMIKV 121
           +  ++F GFSGH   + ++  + + LLL +Q +R  RL VLA     +  +G SRL + V
Sbjct: 64  IAAIDFKGFSGHAMRAMSIAPVFMYLLLQEQDARRLRLGVLAGLGFGLM-IGISRLALGV 122

Query: 122 HSESEVLLGLLVGA----GAAW-AFGLSLRESAPPLRHLLLPLGLAAALMMTGFDKPAPT 176
           HS SEV+ GLL+GA    G  W A G   R +    R LLL +G  A L +    KPAPT
Sbjct: 123 HSVSEVITGLLLGAVISLGFIWYAHG---RATIVFDRKLLL-IGTIALLPILSL-KPAPT 177

Query: 177 QSFLQELAKNLSGRAEVYMRH 197
           + +++ +A  L+G  +   RH
Sbjct: 178 EGWIERIAIYLAGSDKNLHRH 198


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.327    0.137    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 297,897
Number of extensions: 7877
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 121
Effective length of database: 928,958
Effective search space: 112403918
Effective search space used: 112403918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 127 (53.5 bits)