BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1842.p
         (157 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980190|ref|YP_001353183.1| integration host factor alpha-s...   238   9e-65
gi|152980763|ref|YP_001354357.1| integration host factor subunit...    69   2e-13
gi|152983243|ref|YP_001353224.1| DNA-binding protein HU-beta ( h...    56   9e-10

>gi|152980190|ref|YP_001353183.1| integration host factor
           alpha-subunit [Janthinobacterium sp. Marseille]
          Length = 165

 Score =  238 bits (608), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 117/133 (87%), Positives = 125/133 (93%)

Query: 21  MNNVNSNEFQSVLDADLHRAVLESQARSQADKNLPTLTKAELAELLFEQVGLNKREAKDM 80
           MN+VNS E QSVL ADL+RA++E+Q RSQA+KNLPTLTKAELAELLFEQVGLNKREAKDM
Sbjct: 29  MNDVNSAELQSVLAADLNRAMMEAQVRSQAEKNLPTLTKAELAELLFEQVGLNKREAKDM 88

Query: 81  VETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK 140
           VETFFDEIRNALERGE+VKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK
Sbjct: 89  VETFFDEIRNALERGESVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK 148

Query: 141 LKEMVELSSGSPV 153
           LK MVE SS  P+
Sbjct: 149 LKGMVEDSSQQPL 161


>gi|152980763|ref|YP_001354357.1| integration host factor subunit
           beta [Janthinobacterium sp. Marseille]
          Length = 101

 Score = 68.6 bits (166), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 60/98 (61%), Gaps = 1/98 (1%)

Query: 57  LTKAELAELLFEQVG-LNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRP 115
           +TK+EL   L E+   L  ++A   V+T  D + +AL  G+ +++ GFG+F L  +P R 
Sbjct: 1   MTKSELIARLAERYPQLVAKDADYAVKTILDAMSDALATGQRIEIRGFGSFALNSRPPRI 60

Query: 116 GRNPKTGEEIPITARRVVTFHASQKLKEMVELSSGSPV 153
           GRNPK+G+++ +  +RV  F   ++L+E V+   G P+
Sbjct: 61  GRNPKSGDKVMVPEKRVPHFKPGKQLRERVDAMVGQPI 98


>gi|152983243|ref|YP_001353224.1| DNA-binding protein HU-beta (
           histone-like DNA-binding protein) [Janthinobacterium sp.
           Marseille]
          Length = 90

 Score = 56.2 bits (134), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 47/89 (52%)

Query: 57  LTKAELAELLFEQVGLNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPG 116
           + K EL + +     ++K  A   +++    ++  L++  +V L GFG F +  +  R G
Sbjct: 1   MNKTELIDHIAGSADISKAAAARALDSVIGAVKTTLKKNGSVTLVGFGTFSVGKRAARTG 60

Query: 117 RNPKTGEEIPITARRVVTFHASQKLKEMV 145
           RNP+TGE I I A +V  F   + LK+ V
Sbjct: 61  RNPRTGEAIKIKAAKVPKFKPGKALKDAV 89


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.311    0.127    0.335 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 320,165
Number of extensions: 11535
Number of successful extensions: 35
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 3
Length of query: 157
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 81
Effective length of database: 940,049
Effective search space: 76143969
Effective search space used: 76143969
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 125 (52.8 bits)