BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1841.p
         (808 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980129|ref|YP_001353182.1| phenylalanyl-tRNA synthetase be...  1272   0.0  

>gi|152980129|ref|YP_001353182.1| phenylalanyl-tRNA synthetase beta
           chain [Janthinobacterium sp. Marseille]
          Length = 809

 Score = 1272 bits (3291), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 634/809 (78%), Positives = 714/809 (88%), Gaps = 1/809 (0%)

Query: 1   MQFSEKWLRTMVNPTMTSDELSHLLTMSGLEVEEVEPVAPPFTNVVVGEVLEVTKHPDAD 60
           MQFSE WLRTMV+P MTSDEL+HLLTMSGLEVEEVEPVAPPF+NVVV EVLEV +HP+AD
Sbjct: 1   MQFSESWLRTMVDPNMTSDELAHLLTMSGLEVEEVEPVAPPFSNVVVAEVLEVARHPNAD 60

Query: 61  RLNVCRVNVHTGTILNIVCGAPNVRAGLKVPCAMVGAVLPPGPDGKPFEIKVGKLRGVES 120
           RLNVC+VNV TGT+LNIVCGAPNVRAG+KV CAM GA+LPPG DGKPFEIKVG LRGVES
Sbjct: 61  RLNVCQVNVGTGTMLNIVCGAPNVRAGMKVVCAMAGAILPPGEDGKPFEIKVGALRGVES 120

Query: 121 QGMLCSARELKLSEDHGGLLELPDDAPVGQNFRDYMLLNDLKFTIKLTPNKADCLSVLGV 180
           QGMLCSARELKLS++ GGL++LP DAPVGQNFRDY  LNDLKFTIKLTPNKADCLSVLGV
Sbjct: 121 QGMLCSARELKLSDEQGGLMDLPADAPVGQNFRDYYQLNDLKFTIKLTPNKADCLSVLGV 180

Query: 181 AREVSALTGAPLKAPVYQAATVNLDEKLPVRISAPDLCGRFAGRVIRGLNAKAATPPWMK 240
           AREVSALTG PLKAP +Q     + + LPV+ISAPDLCGRF+GR+IRGLNA+A TP WMK
Sbjct: 181 AREVSALTGTPLKAPTFQPVAATITDVLPVKISAPDLCGRFSGRIIRGLNARAQTPDWMK 240

Query: 241 RRLERSGQRSISALVDISNYVMLELGRPSHVFDLDKIHGGLDVRWGRKGESLKLLNGNTV 300
           +RLERSGQR ISALVDISNYVMLELGRP+HVFDL KI+GGLDVRWG+ GESLKLLNGNTV
Sbjct: 241 QRLERSGQRPISALVDISNYVMLELGRPTHVFDLSKINGGLDVRWGKAGESLKLLNGNTV 300

Query: 301 EVDEWVGVISDDKEIESLAGIMGGDATAVSLETTNIYLEAAFWFPQAIQGRARRYNFSTD 360
            VDEWVGVI+D+KEIESLAGIMGGDA+AVSL+T +IYLEAAFW+P AIQGR RR+NFSTD
Sbjct: 301 AVDEWVGVIADEKEIESLAGIMGGDASAVSLDTQDIYLEAAFWYPNAIQGRGRRFNFSTD 360

Query: 361 AAHRFERGVDFATVVDHIERITALLLEICGTAE-TRVGPVDDQIVNLPKREPVTLRTARA 419
           AAHRFERGVDFAT V+H+ERITAL++EICG  + T+VGP+DD +VNLPKRE V++RTARA
Sbjct: 361 AAHRFERGVDFATTVEHMERITALIVEICGQKDLTKVGPIDDHVVNLPKREAVSVRTARA 420

Query: 420 AKVIGVEITDEMVSDIFKRLGLSFDYEPGLFSVTPPSYRFDIEIEEDLIEEVARVYGFEN 479
            KVIGV +TDEM++DIF RLGLSF  + G+FSVTPPSYRFDIEIEEDLIEE+ARVYGFEN
Sbjct: 421 VKVIGVPLTDEMIADIFTRLGLSFTQKDGVFSVTPPSYRFDIEIEEDLIEEIARVYGFEN 480

Query: 480 IPALPPVAANAMRIAPENTRSLFAIRRLLADQDYQEVVNFSFVESAWEADFGGNVDPIKL 539
           IPALPPVAA+AMRI PENTRSLF IRR LAD DYQEVVNFSFVE  WEADF GN +PIKL
Sbjct: 481 IPALPPVAASAMRIPPENTRSLFTIRRQLADADYQEVVNFSFVEQEWEADFAGNTNPIKL 540

Query: 540 LNPIASQMSVMRSSLIAGLVANARYNVNRKAARIRVFEVGAVFHKDAEVVDGPLSVAGFA 599
           LNPIASQMSVMRSS+I  L+AN RYN+NRK +RIR+FE+GA++ ++    DGPLSVAGF 
Sbjct: 541 LNPIASQMSVMRSSMIGSLIANVRYNLNRKVSRIRLFEIGAIYLRNNVEQDGPLSVAGFD 600

Query: 600 QPKRVAALAYGPVAEEQWGQVSRNVDYFDVKADLEALFAPRTLRFVKAEHPALHPGRTAQ 659
           QPKRVAA+AYG VAEEQWG  SRNVDYFDVKADLEALFAP+TL FVK EHPALHPGR+A 
Sbjct: 601 QPKRVAAIAYGSVAEEQWGLASRNVDYFDVKADLEALFAPQTLTFVKVEHPALHPGRSAS 660

Query: 660 VLLGEKVVGVIGELHPKWQQKYDLPLAPVVFEVDAEALQQRDLPSYTEISKFPAVSRDIA 719
           +LL  +V+G IGELHP+WQQKYDLPLAPV+FEV+A ALQ   +PSY EISKFPAV+RD+A
Sbjct: 661 ILLNGEVIGFIGELHPRWQQKYDLPLAPVLFEVNATALQSVGVPSYKEISKFPAVTRDLA 720

Query: 720 LVVKHSVGAQQVLDVLAAEKQANPDCAILQALVLFDEYQGKGLETDEKSLAFRCTLQDTQ 779
           LVVK +V  Q ++D   +EKQ NP C ILQ +VLFDEY+GKGLE DEKSLAFR TLQDTQ
Sbjct: 721 LVVKQTVAMQDLMDAFISEKQYNPVCNILQVVVLFDEYRGKGLEPDEKSLAFRFTLQDTQ 780

Query: 780 NTLQDDKVDLAVNALVAAASVKLGARLRA 808
            TLQDD VD A+ A VAAA+ K GA+LRA
Sbjct: 781 LTLQDDLVDAAMAAFVAAATSKHGAKLRA 809


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,781,378
Number of extensions: 74027
Number of successful extensions: 195
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 1
Length of query: 808
Length of database: 1,221,021
Length adjustment: 91
Effective length of query: 717
Effective length of database: 884,594
Effective search space: 634253898
Effective search space used: 634253898
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)