BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1840.p
         (342 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979826|ref|YP_001353181.1| phenylalanyl-tRNA synthetase al...   642   0.0  

>gi|152979826|ref|YP_001353181.1| phenylalanyl-tRNA synthetase alpha
           chain [Janthinobacterium sp. Marseille]
          Length = 338

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/342 (92%), Positives = 326/342 (95%), Gaps = 4/342 (1%)

Query: 1   MNPLDQLLGQLVTQAQADFAAAPDAAALENAKAKYLGKTGQITEQMKGLGKLAPEERKVQ 60
           MNPL+QL    VTQAQ DFAAA DAAALENAKAKYLGKTGQITEQMK LGKLAPEERK Q
Sbjct: 1   MNPLEQL----VTQAQTDFAAAIDAAALENAKAKYLGKTGQITEQMKSLGKLAPEERKAQ 56

Query: 61  GAIINVAKEQIETALTARRDALANAQMQARLNAEAIDVTLPGRGRGVGGIHPVMRSWQRV 120
           GA+IN AKE+IE ALTARRDAL+NAQM+ARLNAEAID+TLPGRGRG GGIHPVMRSWQRV
Sbjct: 57  GAVINSAKEKIEAALTARRDALSNAQMEARLNAEAIDITLPGRGRGTGGIHPVMRSWQRV 116

Query: 121 EEIFRSIGFDVADGPEIETDWTNFTALNSPENHPARSMQDTFYIEGNDTQGKPLLLRTHT 180
           EEIF SIGFDVADGPEIE DWTNFTALNSPENHPARSMQDTFYIEG DTQGKPLLLRTHT
Sbjct: 117 EEIFGSIGFDVADGPEIENDWTNFTALNSPENHPARSMQDTFYIEGKDTQGKPLLLRTHT 176

Query: 181 SPMQVRYARMNKPPIKVIAPGRTYRVDSDATHSPMFHQVEGLWIAEDISFADLKGVYLNF 240
           SPMQVRYARMNKPPIKVIAPGRTYRVDSDATHSPMFHQVEGLWI E+ISFADLKGVYLNF
Sbjct: 177 SPMQVRYARMNKPPIKVIAPGRTYRVDSDATHSPMFHQVEGLWIDENISFADLKGVYLNF 236

Query: 241 VKAFFETDDLQVRFRPSYFPFTEPSAEIDIAFGSGPLKGRWLEVSGAGQVHPTVVRNMGL 300
           VKAFFETDDLQVRFRPSYFPFTEPSAEIDIAFGSGPLKGRWLEVSGAGQVHPTV+RNMG 
Sbjct: 237 VKAFFETDDLQVRFRPSYFPFTEPSAEIDIAFGSGPLKGRWLEVSGAGQVHPTVLRNMGF 296

Query: 301 DPEQYIGFAFGSGLERLTMLRYGINDLRLFYEGDLRFLKQFN 342
           DPEQ+IGFAFGSGLERLTMLRYGINDLRLFYEGDLRFLKQFN
Sbjct: 297 DPEQFIGFAFGSGLERLTMLRYGINDLRLFYEGDLRFLKQFN 338


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 789,785
Number of extensions: 33247
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 258
Effective length of database: 910,473
Effective search space: 234902034
Effective search space used: 234902034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)