BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1836.p
         (635 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980466|ref|YP_001353177.1| threonyl-tRNA synthetase [Janth...  1127   0.0  

>gi|152980466|ref|YP_001353177.1| threonyl-tRNA synthetase
           [Janthinobacterium sp. Marseille]
          Length = 635

 Score = 1127 bits (2915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/635 (82%), Positives = 576/635 (90%)

Query: 1   MVSVRLPDGSQRQFDNPVTVAQVAANIGTGLAKAALAGRVDGKLVDTSYLIDKDADLAII 60
           M++VRLPDGSQR+FD PVTVAQVAANIGTGLAKAALAG+V+G +VDTSYLI+KD+DLAII
Sbjct: 1   MITVRLPDGSQREFDTPVTVAQVAANIGTGLAKAALAGKVNGDVVDTSYLIEKDSDLAII 60

Query: 61  TDKDADGLEVIRHSTAHLLAYAVKELFPDAQVTIGPVIDNGFYYDFSYKRPFTPEDLQAI 120
           TDKDA+G++VIRHSTAHLLAYAVKELFPDAQVTIGPVIDNGFYYDFSYKRPFTPEDL AI
Sbjct: 61  TDKDAEGIDVIRHSTAHLLAYAVKELFPDAQVTIGPVIDNGFYYDFSYKRPFTPEDLVAI 120

Query: 121 EKKMAELAKKDEPVTRKVLPRDEAVAYFKSIGEDYKAEIIASIPQNEDVSLYTEGSFTDL 180
           EKKM ELAKKDEPVTRKV+PRDEAVAYFKSIGE YKAEII SIP +++VSLYTEG FTDL
Sbjct: 121 EKKMTELAKKDEPVTRKVMPRDEAVAYFKSIGEAYKAEIIESIPADQEVSLYTEGKFTDL 180

Query: 181 CRGPHVPSTGKLKVFKLMKLAGAYWRGDSNNEMLQRVYGTAWAKKEDQEAYLHMLEEAEK 240
           CRGPHVPSTGKLKVFKLMKLAGAYWRGDS NEMLQR+YGTAWAKKE+QEAYLHMLEEAEK
Sbjct: 181 CRGPHVPSTGKLKVFKLMKLAGAYWRGDSKNEMLQRIYGTAWAKKEEQEAYLHMLEEAEK 240

Query: 241 RDHRKLGRALDLFHFQDEAPGLIFWHPKGWTIWQQVEQYMRRVYQDNGYQEVKAPQILDR 300
           RDHRKLG+ LD FHFQ+EAPGLIFWHPKGW+IWQQVEQYMR+VYQDN YQEVKAPQILDR
Sbjct: 241 RDHRKLGKQLDFFHFQEEAPGLIFWHPKGWSIWQQVEQYMRKVYQDNDYQEVKAPQILDR 300

Query: 301 SLWEKTGHWENYRENMFTTESENRAYALKPMNCPGHIQIFNSGLHSYRDLPLRYGEFGQC 360
            LWEKTGHW+NYRENMF TESENR+YALKPMNCPGH+QI+NS + SYRDLPLRYGEFGQC
Sbjct: 301 GLWEKTGHWDNYRENMFVTESENRSYALKPMNCPGHVQIYNSDMRSYRDLPLRYGEFGQC 360

Query: 361 HRNEPSGALHGMMRVRGFTQDDGHIFCTEDQIQEEVAAFNRVVREVYDCFGFKEVAVKLA 420
           HRNEPSGALHGMMRVRGFTQDDGHIFCTE+QI EEV AF+     VY  FGF+ + VKLA
Sbjct: 361 HRNEPSGALHGMMRVRGFTQDDGHIFCTEEQIAEEVTAFHAQAMAVYAAFGFENIDVKLA 420

Query: 421 LRPEKRIGAEEVWDKAENALREAIRASGSEWEELPGEGAFYGPKIEYHLKDSIGRSWQCG 480
           LRP+ RIG EE WD AE +LR A+RA G  W ELPGEGAFYGPKIEYHLKDS+GR+WQ G
Sbjct: 421 LRPDSRIGTEESWDIAEESLRSALRACGVSWTELPGEGAFYGPKIEYHLKDSLGRAWQVG 480

Query: 481 TMQVDFSMPARLGAEYVTEDNNRKVPVMLHRAIVGSLERFIAILIENHAGAMPLWLAPTQ 540
           T+Q+D SMP RLGAEYV  DN RK P+MLHRAIVGSLERFI ILIE++AGA+PLWLAP Q
Sbjct: 481 TVQIDPSMPGRLGAEYVAVDNTRKTPIMLHRAIVGSLERFIGILIEHYAGALPLWLAPVQ 540

Query: 541 VVILNISDAQADYVQNVAQTLKKQGFRVETDLRNEKITYKIRQHSIQKPPYILVVGDKER 600
           + +LNISDAQA+Y Q VAQ LKKQGFRV  DLRNEKITYKIR+HS+QK PYI+V+GDKER
Sbjct: 541 IAVLNISDAQAEYAQAVAQNLKKQGFRVHLDLRNEKITYKIREHSVQKLPYIIVIGDKER 600

Query: 601 DANTVAVRARGNVDLGVMSIDTLVERLKDEVAAKA 635
           DA TVAVRARGNVDLGVM +D LV+RL  E+ AKA
Sbjct: 601 DAGTVAVRARGNVDLGVMPVDLLVDRLNSEIDAKA 635


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,532,823
Number of extensions: 66480
Number of successful extensions: 189
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1,221,021
Length adjustment: 89
Effective length of query: 546
Effective length of database: 891,988
Effective search space: 487025448
Effective search space used: 487025448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)