BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1834.p (135 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980357|ref|YP_001353780.1| CheY chemotaxis protein [Janthi... 159 8e-41 gi|152982726|ref|YP_001353786.1| chemotaxis protein CheY [Janthi... 74 2e-15 gi|152982362|ref|YP_001353295.1| CheY chemotaxis protein [Janthi... 64 4e-12 gi|152980160|ref|YP_001353976.1| phosphate regulon two-component... 62 9e-12 gi|152981322|ref|YP_001355016.1| two components system response ... 61 2e-11 >gi|152980357|ref|YP_001353780.1| CheY chemotaxis protein [Janthinobacterium sp. Marseille] Length = 132 Score = 159 bits (401), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 79/130 (60%), Positives = 98/130 (75%), Gaps = 2/130 (1%) Query: 1 MAADDQYFLVVDDFSTMRRIVSGLLKELEYTKMVEADDGSTAMKILEAGAVPISFVLTDW 60 MA + FLVVDDFSTMRRIV LLKEL YT + EA+DG+ A+ L + FV++DW Sbjct: 1 MAGPNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGAMALAKLRSEQ--FDFVVSDW 58 Query: 61 NMPVMDGLALLKKIRSTPSLAHLPVLMITAEAKKENIVVAAQAGADGYIVKPFNAVTLKE 120 NMP MDGL +L+ IR+ P+L+ LPVLM+TAEAKKENI+ AAQAGA+GY+VKPF A TL E Sbjct: 59 NMPNMDGLTMLQHIRADPALSKLPVLMVTAEAKKENIIAAAQAGANGYVVKPFTAATLDE 118 Query: 121 KIEKILARRA 130 K+ KI + A Sbjct: 119 KLAKIFEKLA 128 >gi|152982726|ref|YP_001353786.1| chemotaxis protein CheY [Janthinobacterium sp. Marseille] Length = 121 Score = 74.3 bits (181), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 69/119 (57%), Gaps = 3/119 (2%) Query: 9 LVVDDFSTMRRIVSGLLKELEYTKMVEADDGSTAMKILEAGAVPISFVLTDWNMPVMDGL 68 L VDD ++R++V L+ Y ++ EA DG + +A VLTD NMP MDG Sbjct: 6 LAVDDSGSLRQMVVFSLRAAGY-QVTEAVDGQDGLD--KAKTQVFDLVLTDQNMPRMDGF 62 Query: 69 ALLKKIRSTPSLAHLPVLMITAEAKKENIVVAAQAGADGYIVKPFNAVTLKEKIEKILA 127 +L++ +R+ + +P+L++T E+ E AGA+G++VKPF+ L E ++K++ Sbjct: 63 SLIRALRALSTYQKIPILVLTTESSDEMKAKGRAAGANGWLVKPFDPQRLTEVVKKVIG 121 >gi|152982362|ref|YP_001353295.1| CheY chemotaxis protein [Janthinobacterium sp. Marseille] Length = 121 Score = 63.9 bits (154), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 44/122 (36%), Positives = 63/122 (51%), Gaps = 6/122 (4%) Query: 8 FLVVDDFSTMRRIVSGLLK--ELEYTKMVEADDGSTAMKILEAGAVPISFVLTDWNMPVM 65 LVVDD +T+R V LK +L+ V+ DG MK G I V++D NMP M Sbjct: 4 ILVVDDSATVRNEVGDFLKKNDLDVVLAVDGRDGLAKMK----GDSSIKLVISDVNMPNM 59 Query: 66 DGLALLKKIRSTPSLAHLPVLMITAEAKKENIVVAAQAGADGYIVKPFNAVTLKEKIEKI 125 DGL + +KIRS + + ++M+T E AG G+IVKPF + +K+ Sbjct: 60 DGLTMAEKIRSELGNSSVNIIMLTTENSPMMKERGKAAGIKGWIVKPFKGDAVLATFKKL 119 Query: 126 LA 127 +A Sbjct: 120 VA 121 >gi|152980160|ref|YP_001353976.1| phosphate regulon two-component response regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 62.4 bits (150), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 3/129 (2%) Query: 1 MAADDQYFLVVDDFSTMRRIVSGLLKELEYTKMVEADDGSTAMKILEAGAVPISFVLTDW 60 MAA+ L+V+D + +V+ LK + + + A ++ +P +L DW Sbjct: 1 MAAEKPTILIVEDEPPIIELVTFTLKGAGWN-VAAVQNAGDAWDFIQQ-RLP-QLILLDW 57 Query: 61 NMPVMDGLALLKKIRSTPSLAHLPVLMITAEAKKENIVVAAQAGADGYIVKPFNAVTLKE 120 +P GL LL +IR+ LP++M+TA++ +E+ + GAD Y+ KPF+ L Sbjct: 58 MLPDQSGLRLLSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTA 117 Query: 121 KIEKILARR 129 +I +L R+ Sbjct: 118 RINALLRRK 126 >gi|152981322|ref|YP_001355016.1| two components system response regulator [Janthinobacterium sp. Marseille] Length = 246 Score = 60.8 bits (146), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 70/129 (54%), Gaps = 5/129 (3%) Query: 4 DDQYFLVVDDFSTMRRIVSGLLKELEYTKMVEADDGSTAMKILEAGAVPISFVLTDWNMP 63 ++ + L+VDD +R +++ L E + A +G +LE G+V ++ D +P Sbjct: 3 NNDHILIVDDDREIRELLASYL-EKNGMRTSLAANGRQMRTVLEQGSV--DLIVLDLMLP 59 Query: 64 VMDGLALLKKIRSTPSLAHLPVLMITAEAKKENIVVAAQAGADGYIVKPFNAVTLKEKIE 123 DGL L +++R+ +PVLM+TA ++ + ++ + GAD Y+ KPF L +I Sbjct: 60 GEDGLTLCRELRAG-KWRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIR 118 Query: 124 KILARRANM 132 +L RRA M Sbjct: 119 SVL-RRARM 126 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.133 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 290,098 Number of extensions: 10745 Number of successful extensions: 112 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 128 Number of HSP's successfully gapped: 12 Length of query: 135 Length of database: 1,221,021 Length adjustment: 74 Effective length of query: 61 Effective length of database: 947,443 Effective search space: 57794023 Effective search space used: 57794023 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 124 (52.4 bits)