BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1833.p (750 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980252|ref|YP_001353176.1| GTP pyrophosphokinase [Janthino... 1142 0.0 gi|152979858|ref|YP_001353016.1| guanosine-3',5'-bis(diphosphate... 373 e-104 >gi|152980252|ref|YP_001353176.1| GTP pyrophosphokinase [Janthinobacterium sp. Marseille] Length = 759 Score = 1142 bits (2955), Expect = 0.0, Method: Compositional matrix adjust. Identities = 562/761 (73%), Positives = 639/761 (83%), Gaps = 13/761 (1%) Query: 1 MVSVASTQGEGLAAITAGLGPDDAARVEQALAELEPLYADRQILSGQNALQ-------FA 53 MVS+AS+Q + + +GL D+ARV ALA ++P+Y+ +++ +GQ+A + FA Sbjct: 1 MVSLASSQSDTQELLRSGLTEHDSARVMDALAFVKPIYSGKKVSAGQDAFESEQDTFEFA 60 Query: 54 VSVATVLTALNVDADTRIAGLAFEVQMLYPELDEKLEERFGKEIADLVGNVRQLMRFHSL 113 VATVL+ L DADTRIA L FE+ + P +K+EERFGKE+ +LV VRQLMR H + Sbjct: 61 QGVATVLSQLETDADTRIAALLFELATIDPTAADKIEERFGKEVNNLVLGVRQLMRLHEV 120 Query: 114 SFQPQNQEVLRGKNAAQQAAAQVETLRKMLLAMATDMRAVLVRLASRVATLRYFAETKQE 173 +F E R KNAAQ+AAAQ+E +RKMLLAMA+DMR VLVRL +RV TLRYFA+ K + Sbjct: 121 TFV--QHEAARSKNAAQEAAAQLEVVRKMLLAMASDMRVVLVRLGTRVTTLRYFADNKVQ 178 Query: 174 NEASAQYARQTFELYAPLANRLGIWQLKWELEDLSFRFLEPVTYKRIAKMLEEKRLEREA 233 NE S QYAR+TF+LYAPLANRLG+WQLKWELEDLSFRFL+P YKRIA LEEKR+EREA Sbjct: 179 NERSKQYARETFDLYAPLANRLGVWQLKWELEDLSFRFLQPEAYKRIASQLEEKRVEREA 238 Query: 234 FVANAIARLRAEMAAQEIRAEVSGRPKHIYSIWNKMRGKSIDFSELYDVRAFRVIVDDVK 293 FV NAI RL++EMAA I+AEV GRPKHI+SIW+K+RGK+I+FS+LYDVRAFRVIVDDVK Sbjct: 239 FVENAIKRLQSEMAAAGIKAEVFGRPKHIFSIWSKLRGKAIEFSDLYDVRAFRVIVDDVK 298 Query: 294 TCYAVLGIVHNIWTPIPEEFDDYISRPKQNGYQSLHTVVMAEDGRALEVQIRTHEMHHFA 353 TCY VLGI+HNIW PIPEEFDDYISRPK NGYQSLHT+V+AEDGR LEVQ+RT++MH FA Sbjct: 299 TCYTVLGIIHNIWAPIPEEFDDYISRPKSNGYQSLHTIVIAEDGRPLEVQVRTNDMHDFA 358 Query: 354 EYGVAAHWRYKESGGSNFSAQKYDEKIAWLRQLLAWKNEVTDAVVDQEEVRRDWVQKLKS 413 EYGVAAHWRYKE+GGSNFS QKYDEKIAWLRQLLAWK+EV D VV QEEV RDWV+KLKS Sbjct: 359 EYGVAAHWRYKEAGGSNFSGQKYDEKIAWLRQLLAWKSEVVDTVVGQEEVHRDWVEKLKS 418 Query: 414 ATLDERIYVLTPQARVIELPSGATPIDFAYHLHSDVGHRCRGARVDGVMVPLNTTLKNGQ 473 ATLD+RIYVLTPQARVIELP+GATPIDFAYHLHSDVGHRCRGARVDGV+VPLNT LKNGQ Sbjct: 419 ATLDDRIYVLTPQARVIELPNGATPIDFAYHLHSDVGHRCRGARVDGVLVPLNTVLKNGQ 478 Query: 474 TVEIITAKS----GPGVGPSRDWLSPDYAASSRTRSKIRAWFNAIEQQETLSVGRGLLEK 529 TV+IITAK VGPSRDWLSP YA SSRTR+K+RAWFNAI+QQETLS GRGL+EK Sbjct: 479 TVDIITAKGVSTVTGTVGPSRDWLSPGYAVSSRTRAKVRAWFNAIDQQETLSHGRGLVEK 538 Query: 530 TLQREGKTAVNLEELAQKLGFAKVDDLCLSLAKEEFSLRHVEQALHEGQEKKPEIDDEAL 589 TLQREGKTAVNLEELA KLGF+KVDDL L++ K+EFSLR VE ALH D+A+ Sbjct: 539 TLQREGKTAVNLEELAHKLGFSKVDDLFLAVGKDEFSLRTVEHALHGDDPNAVTESDDAV 598 Query: 590 ITRKSRASSIVQGAKSGVLVVGTDGLLTQLARCCKPAPPDVIAGFVTRGKGVSIHRVNCK 649 I RKSRASS+V GAKSGVLVVGTDGL+TQLA+CCKPAPPD I GF+TRGKGVSIHR +CK Sbjct: 599 IPRKSRASSVVHGAKSGVLVVGTDGLMTQLAKCCKPAPPDEIVGFITRGKGVSIHRADCK 658 Query: 650 NFAEMSSHAPERVIQTTWGAPARDTVYPVDIFVLASDRQGLLRDISDIFLRDKINVIGVS 709 NF EM + APERVIQT WG P TVYPVDIFVLA DRQGLLRDISDIFLR+KINVIGVS Sbjct: 659 NFVEMRTKAPERVIQTAWGRPESATVYPVDIFVLAGDRQGLLRDISDIFLREKINVIGVS 718 Query: 710 TQSVKGHARMAFTAEIGSTEQLQKALTVIREVKGVIEAKRQ 750 TQSVKG ARMAFTAEI ST QLQKAL VIREV GV+EAKR Sbjct: 719 TQSVKGQARMAFTAEIASTAQLQKALNVIREVSGVLEAKRH 759 >gi|152979858|ref|YP_001353016.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Janthinobacterium sp. Marseille] Length = 758 Score = 373 bits (957), Expect = e-104, Method: Compositional matrix adjust. Identities = 237/742 (31%), Positives = 378/742 (50%), Gaps = 64/742 (8%) Query: 19 LGPDDAARVEQALAELEPLYADRQILSGQNALQFAVSVATVLTALNVDADTRIAGLAFEV 78 L P + +V++A + + + +SG+ + ++VA + +DA +A L +V Sbjct: 57 LTPSELKKVKEAYRFSDEAHLGQMRMSGEPYISHPIAVAEICADWKLDAQAIMAALLHDV 116 Query: 79 QMLYPELDEKLEERFGKEIADLVGNVRQLMRFHSLSFQPQNQEVLRGKNAAQQAAAQVET 138 ++L ERFG +A+LV + +L + + FQ Q AQ E Sbjct: 117 MEDQDVRKDELIERFGAPVANLVDGLSKLEK---IEFQ-------------SQVEAQAEN 160 Query: 139 LRKMLLAMATDMRAVLVRLASRVATLRYFAETKQENEASAQYARQTFELYAPLANRLGIW 198 RKMLLAMA D+R +LV+LA R+ +R + + AR+T E+Y P+A+RLG+ Sbjct: 161 FRKMLLAMARDVRVILVKLADRLHNMRTLGSMAPAKKR--RIARETMEVYVPIAHRLGLN 218 Query: 199 QLKWELEDLSFRFLEPVTYKRIAKMLEEKRLEREAFVANAIARLRAEMAAQEIRAEVSGR 258 + EL+DL+F L P+ YK +AK ++ R R V+ + + + A I A+V GR Sbjct: 219 NIYRELQDLAFSHLYPMRYKTLAKAVKAARGNRREVVSKILESVNNTLDATGIPAQVYGR 278 Query: 259 PKHIYSIWNKMRGKSIDFSELYDVRAFRVIVDDVKTCYAVLGIVHNIWTPIPEEFDDYIS 318 K +Y I+ KM K + FS++ D+ FRV+VD CY LG +H ++ P+P +F DYI+ Sbjct: 279 EKTLYGIYTKMLNKRLSFSQVLDIYGFRVVVDSFANCYVALGTLHALFKPMPGKFKDYIA 338 Query: 319 RPKQNGYQSLHTVVMAEDGRALEVQIRTHEMHHFAEYGVAAHWRYKESGGSNFSAQKYDE 378 PK NGYQSLHT ++ G +E QIRT +MH AE GVAAHW YK+ GS Q+ Sbjct: 339 IPKLNGYQSLHTTLIGPYGTPIEFQIRTQDMHRVAESGVAAHWLYKDDEGSLSDLQQRTH 398 Query: 379 KIAWLRQLLAWKNEVTDAVVDQEEVRRDWVQKLKSATLDERIYVLTPQARVIELPSGATP 438 AWL+ LL + + D+ ++++ +K + +YV TP++++I LP GAT Sbjct: 399 --AWLQSLLDIQKQTGDSA--------EFLEHVKVDLFPDSVYVFTPKSKIIALPRGATA 448 Query: 439 IDFAYHLHSDVGHRCRGARVDGVMVPLNTTLKNGQTVEIITAKSGPGVGPSRDWLSPDYA 498 +DFAY +H+D+G + +++ VPL T L+NG VEIIT+ P P+ +WL + Sbjct: 449 LDFAYTIHTDIGDQTIAVKINLEQVPLRTELRNGDIVEIITS---PSSRPNPNWLG--FV 503 Query: 499 ASSRTRSKIRAWFNAIEQQETLSVGRGLLEKTLQREGKTAVNL---------EELAQKLG 549 + + RS IR I E++ +GR LL + L +NL E L + Sbjct: 504 RTGKARSAIRHHLRTINLTESIELGRRLLSQAL-----VTLNLDPELPAPVAERLLNESS 558 Query: 550 FAKVDDLC--LSLAKEEFSL--RHVEQALHEGQ-EKKPEIDDEALITRKSRASSIVQGAK 604 +DDL + + K +L RH+ + Q +P+ID + K Sbjct: 559 AKSLDDLYADIGVGKRMAALVARHILGMVENDQLVPRPQIDANGEVLPKK---------I 609 Query: 605 SGVLVVGTDGLLTQLARCCKPAPPDVIAGFVTRGKGVSIHRVNCKNFAEMSSHAPERVIQ 664 V++ G++G+ QLA CC+P P D I G + R +G++IH +C+ S P+R I Sbjct: 610 DPVVIYGSEGVSVQLASCCQPIPGDAIIGQMKRDQGLTIHTHDCEVARRQHSKEPDRWID 669 Query: 665 TTWGAPARDTVYPVDIFVLASDRQGLLRDISDIFLRDKINVIGVSTQSVKGH--ARMAFT 722 WG+ D + I +LA + +G+L ++ N+ V K H + FT Sbjct: 670 VVWGSDI-DRRFDCSITLLARNEKGILARVAAEIGESDSNITHVGMDEDKDHMITYLHFT 728 Query: 723 AEIGSTEQLQKALTVIREVKGV 744 ++ L + + +R + GV Sbjct: 729 VQVEDRVHLARLMRNLRSIPGV 750 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.132 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,658,781 Number of extensions: 67625 Number of successful extensions: 209 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 202 Number of HSP's successfully gapped: 2 Length of query: 750 Length of database: 1,221,021 Length adjustment: 90 Effective length of query: 660 Effective length of database: 888,291 Effective search space: 586272060 Effective search space used: 586272060 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)