BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1832.p
         (116 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980143|ref|YP_001353175.1| YigF family translation initiat...   182   5e-48
gi|152981748|ref|YP_001351855.1| translation initiation inhibito...    69   7e-14

>gi|152980143|ref|YP_001353175.1| YigF family translation initiation
           factor [Janthinobacterium sp. Marseille]
          Length = 116

 Score =  182 bits (462), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 85/114 (74%), Positives = 97/114 (85%)

Query: 1   MSVQRLHVGKRLSEVAIHNGTVYLAGQIAEDATQNIEGQTREVLGHIDRLLAEAGSDKTK 60
           M++ RLH+G  LSEVAIHNGTVYLAGQIAED  QNI+GQTREVLGHIDRLLAEAGSDKT+
Sbjct: 1   MNITRLHIGDTLSEVAIHNGTVYLAGQIAEDTAQNIQGQTREVLGHIDRLLAEAGSDKTR 60

Query: 61  ILSCQIFLSDVKDFAGMNAVWDEWVAPGNAPPRATVEAKLARPELLVEIIIVAA 114
           ILSCQI+++DVKDF GMN  W+EWV  G+ PPRATV A+   P  LVEII+VAA
Sbjct: 61  ILSCQIYIADVKDFDGMNEAWNEWVPQGHTPPRATVGAQFPDPTRLVEIIVVAA 114


>gi|152981748|ref|YP_001351855.1| translation initiation inhibitor
           [Janthinobacterium sp. Marseille]
          Length = 155

 Score = 68.9 bits (167), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 62/111 (55%), Gaps = 9/111 (8%)

Query: 13  SEVAIHNGTVYLAGQIAEDATQN------IEGQTREVLGHIDRLLAEAGSDKTKILSCQI 66
           S++  H GT+YL+G +  +A  N      IE QT+ VL HI   L   G     +L   +
Sbjct: 47  SQMVAHGGTIYLSGVLPLNAAGNAIQGTTIEEQTKAVLDHIGEKLKSQGLSHDDVLMSTV 106

Query: 67  FLSDVKDFAGMNAVWDEWVAPGNAPPRATVE-AKLARPELLVEIIIVAAQK 116
           +L D+ DFA MN V+ E+    N P RATV+ A++ R + L+EI ++  +K
Sbjct: 107 YLKDLNDFAAMNRVYGEYFKT-NPPARATVQVARIPR-DALIEIAVIVGRK 155


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 269,702
Number of extensions: 10006
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 3
Length of query: 116
Length of database: 1,221,021
Length adjustment: 72
Effective length of query: 44
Effective length of database: 954,837
Effective search space: 42012828
Effective search space used: 42012828
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)