BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1831.p
         (288 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979962|ref|YP_001353174.1| hypothetical protein mma_1484 [...   423   e-120

>gi|152979962|ref|YP_001353174.1| hypothetical protein mma_1484
           [Janthinobacterium sp. Marseille]
          Length = 288

 Score =  423 bits (1087), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 191/288 (66%), Positives = 236/288 (81%)

Query: 1   MTEAVVKTVQCISPAGLHTMAYKEWGDARNPNVLVCVHGVTRVSDDFDRMARELCDTYRV 60
           MT+A +K+VQC+SP GLH M+YKEWGD+ NP  LVCVHG++RVSDDFD +A EL + YRV
Sbjct: 1   MTQAQIKSVQCLSPTGLHQMSYKEWGDSSNPKTLVCVHGLSRVSDDFDMLAAELANDYRV 60

Query: 61  ICPDVVGRGRSGRLANPQFYTVPQYVADMVTLLARADAEIVDWFGTSMGGLIGMGLASLP 120
           ICPDVVGRGRSGRL +PQ+Y +PQYV+DMVTL+AR D   + W GTS+GG+IGM LASLP
Sbjct: 61  ICPDVVGRGRSGRLLDPQYYQIPQYVSDMVTLIARLDVTELHWLGTSLGGVIGMALASLP 120

Query: 121 GNPIRRLVLNDIGPSINGAALARIGEYIGQDVRFDTFEEAAQYIRTISASFGHHSDEEWH 180
           GNP+R+L+LNDIGP ++ AALARIGEY+G+DVRF TF+EA  Y+R IS SFG HSD +W 
Sbjct: 121 GNPVRKLILNDIGPEMDAAALARIGEYVGKDVRFATFDEAWNYVRAISLSFGPHSDPQWR 180

Query: 181 KLAKDVLRQNEEGKWVRHYDLGLAVPFKLTTPEAASAAEQMLWAAYDAIRCPTLLVRGAQ 240
           KLA DV+ Q+ +G+WV  YD G+AVPFK TT  +  A  Q LWAAYDAIRCPTL++RGA+
Sbjct: 181 KLAADVMHQDADGQWVFSYDAGIAVPFKATTVHSVQADTQRLWAAYDAIRCPTLVIRGAE 240

Query: 241 SDLLLPEVAQEMTRRGPKAKLVELPDVGHAPTFMHAPQIEVARQFLLG 288
           SDLL  +  Q M++RGPKA++VELP VGHAPTF+HA QI VA++FLL 
Sbjct: 241 SDLLSNQTVQAMSQRGPKAQIVELPGVGHAPTFLHADQIAVAKKFLLA 288


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 721,302
Number of extensions: 31403
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 206
Effective length of database: 917,867
Effective search space: 189080602
Effective search space used: 189080602
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)