BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1827.p
         (186 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982650|ref|YP_001355167.1| hypothetical protein mma_3477 [...   169   1e-43

>gi|152982650|ref|YP_001355167.1| hypothetical protein mma_3477
           [Janthinobacterium sp. Marseille]
          Length = 206

 Score =  169 bits (428), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 86/183 (46%), Positives = 118/183 (64%), Gaps = 5/183 (2%)

Query: 5   RFSVPFYLAAAVCLGLSACSTGKPAFYHQEEFSDTSAFSRSFPGSEKAVCEAARRALLGQ 64
           +FS    L+A     ++ C+  KP  Y  E+F  T  ++R F  S    CEA RR LL Q
Sbjct: 2   QFSSRILLSALALATIAGCAGPKPVAYQTEKFDSTEIYARRFTVSSDVACEAVRRTLLSQ 61

Query: 65  GYVISKSTDNTLDGNKSFQPASDKHMEIAFHVVCAS-NGNGKSSTMFASATQDGYGIKKS 123
           GYVIS ST   +D  KSFQP +D H++IAF VVC + N +G  +++FA+A +D Y +KK 
Sbjct: 62  GYVISASTTTQIDARKSFQPENDVHVQIAFRVVCTTDNADGNLTSVFANALEDRYALKKI 121

Query: 124 NSSASLGVSVLGSVSMPFAASDDSMVRVSSETIRSPDFYDRFFGAAERYLLVDVDDDTAP 183
           N+SAS+GV  LGS+S+PF++SDDS+V+V+S TI S  FY RFF   ERYL     ++ AP
Sbjct: 122 NNSASVGVGALGSLSLPFSSSDDSLVKVASTTIASEKFYSRFFQLVERYL----TNEAAP 177

Query: 184 AKK 186
           A +
Sbjct: 178 APE 180


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.128    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 386,966
Number of extensions: 12709
Number of successful extensions: 43
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 1,221,021
Length adjustment: 78
Effective length of query: 108
Effective length of database: 932,655
Effective search space: 100726740
Effective search space used: 100726740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)