BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1825.p
         (167 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980312|ref|YP_001353035.1| riboflavin synthase subunit bet...   229   5e-62
gi|152979909|ref|YP_001354029.1| 6,7-dimethyl-8-ribityllumazine ...    55   2e-09

>gi|152980312|ref|YP_001353035.1| riboflavin synthase subunit beta
           [Janthinobacterium sp. Marseille]
          Length = 167

 Score =  229 bits (585), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 104/146 (71%), Positives = 126/146 (86%)

Query: 15  QRIAFVQASWHKDIVDQCRIGFTEEMAKLGWPASSIDFFELPGAFEIPLHAKVLAKTGKY 74
           +RIAF+QASWHK+IVDQCRI F  EMA+ G+   SIDFFE+ GAFEIPLHAKVLAK+G+Y
Sbjct: 14  RRIAFIQASWHKEIVDQCRIAFIAEMAERGYTEDSIDFFEVAGAFEIPLHAKVLAKSGRY 73

Query: 75  AGIVASGLVVDGGIYRHDFVAQSVISALMQVQLETEVPVFSAVLTPHHFHAHSEHHDYFH 134
           A +V +GLVVDGG+YRH+FV+Q+VIS LMQVQLETEVPV SAVLTPHHFH+H EH ++F 
Sbjct: 74  AAVVGTGLVVDGGVYRHEFVSQAVISGLMQVQLETEVPVISAVLTPHHFHSHDEHQNFFF 133

Query: 135 AHFLVKGREAAQACASTVAKLAEVRA 160
            HFLVKG+EAA ACA T+A+L ++ A
Sbjct: 134 QHFLVKGKEAAHACADTIARLQKIEA 159


>gi|152979909|ref|YP_001354029.1| 6,7-dimethyl-8-ribityllumazine
           synthase [Janthinobacterium sp. Marseille]
          Length = 162

 Score = 55.5 bits (132), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 7/131 (5%)

Query: 16  RIAFVQASWHKDIVDQCRIGFTEEMAKLGWPASSIDFFELPGAFEIPLHAKVLAKTGKYA 75
           RI  VQA +++D+          E+  LG     +    +PGA EIPL  + +A+T ++ 
Sbjct: 16  RIGIVQARFNQDVCHGLLASCLAELKHLGVEDEDVLHVTVPGALEIPLALRKMAETLQFD 75

Query: 76  GIVASGLVVDGGIYRHDFVAQSVISALMQVQLETEVPVFSAVLTPHHFHAHSEHHDYFHA 135
            ++A G V+ G  Y  + V+    + + +V L+  +P+ +AVLT       ++  +   A
Sbjct: 76  ALIAIGAVIRGETYHFELVSNESGAGITRVGLDFGLPIANAVLT-------TDTDEQAEA 128

Query: 136 HFLVKGREAAQ 146
               KG +AA+
Sbjct: 129 RMEEKGADAAR 139


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.132    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 367,453
Number of extensions: 13879
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 2
Length of query: 167
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 90
Effective length of database: 936,352
Effective search space: 84271680
Effective search space used: 84271680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)