BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1823.p
         (292 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980711|ref|YP_001352968.1| heat shock protein HtpX [Janthi...   385   e-108
gi|152982799|ref|YP_001351899.1| Zn-dependent protease with chap...    84   8e-18

>gi|152980711|ref|YP_001352968.1| heat shock protein HtpX
           [Janthinobacterium sp. Marseille]
          Length = 290

 Score =  385 bits (989), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 189/290 (65%), Positives = 233/290 (80%), Gaps = 2/290 (0%)

Query: 1   MKRIVLFLVTNLAVMLVLSFTASLLGVNRYLTANGLNLGMLLVFCGLMGFGGSFISLFMS 60
           MKRI LF+ TN+AV+ V+S   SLLGV+R+++  GLNL MLLVF  ++GF GS ISL +S
Sbjct: 1   MKRIFLFIATNIAVIAVMSVVLSLLGVDRFISQAGLNLPMLLVFSLVVGFTGSIISLLIS 60

Query: 61  KTIAKWSTGARVIEQPQNSTELWLLQTVQTLAARAQLPMPEVAVYDGEPNAFATGASKNN 120
           K +AKWSTGARVI+ P +STELWL+ TV  LA RA + MPEVAVYDGEPNAFATGA +++
Sbjct: 61  KPMAKWSTGARVIDAPSSSTELWLIDTVSKLAQRAGIKMPEVAVYDGEPNAFATGAFRDS 120

Query: 121 SLVAVSTGLLQSMTKDEVEAVLAHEVAHIANGDMVTLTLIQGVVNTFVMFFARIVGYFVD 180
           +LVAVSTGLLQSMTKDEVEAVLAHEVAH+ANGDMVT+TL+QGVVNTFV+F +R+VGYFVD
Sbjct: 121 ALVAVSTGLLQSMTKDEVEAVLAHEVAHVANGDMVTMTLVQGVVNTFVVFLSRVVGYFVD 180

Query: 181 SFLRRNNEENSGPGIAYMATVFVCEIVFGILASIIVMYFSRQREYRADAGAASLMGSRTP 240
             + R+N  N+  GI Y  TV V +IVFGI AS+IV +FSR RE+RADAGAA L+GS  P
Sbjct: 181 RAISRDN--NNSQGIGYTITVIVSQIVFGIAASVIVAWFSRHREFRADAGAAKLLGSPQP 238

Query: 241 MINALRRLGGLQADGLPQNLQASGISGRQSWLGLFSSHPPLESRIAALQS 290
           M+ AL RLGG++   LP+ L + GI+ +  +  LFSSHPP+E RIAAL+S
Sbjct: 239 MMKALARLGGIEPTSLPEGLASLGINDKPGFAALFSSHPPIEDRIAALRS 288


>gi|152982799|ref|YP_001351899.1| Zn-dependent protease with
           chaperone function [Janthinobacterium sp. Marseille]
          Length = 659

 Score = 84.3 bits (207), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 120/265 (45%), Gaps = 36/265 (13%)

Query: 51  GGSFISLFMSK----TIAKWSTGARVIEQPQNSTELWLLQTVQTLAARAQLPMPEVAVYD 106
           GG+ I +F  +     +A+   G +V     +  E  LL  V+ +A  + +  P V +  
Sbjct: 72  GGTMIEIFNLRDGGDAVARMVGGRQVSLSTIDLQERRLLNIVEEMAVASGIACPRVYLLA 131

Query: 107 GEP--NAFATGASKNNSLVAVSTGLLQSMTKDEVEAVLAHEVAHIANGDM-VTLTLIQGV 163
            E   NAFA G + N ++V ++ G L  +T+DE++ V+AHE +HI NGDM + L L+   
Sbjct: 132 KEESINAFAAGYNPNEAVVVLTQGALTRLTRDELQGVIAHEFSHILNGDMRLNLKLLG-- 189

Query: 164 VNTFVMFFARIVGYFVDSFLRRNNEENSGPGIAYMATVF-VCEIVFGI-----------L 211
               V F   +VG F    +      +      +  TVF +   +FGI            
Sbjct: 190 ----VTFGIEMVGDFGRQAMEFAWYSSDDIEANFKLTVFRIIAFIFGIAFFVIGYIGLFF 245

Query: 212 ASIIVMYFSRQREYRADAGAASLMGSRTPMINALRRLGGLQADGL---------PQNLQA 262
             +I    SRQREY ADA A     +   + NALR++  L   G           + L  
Sbjct: 246 GRVIKFAVSRQREYLADASAIQFTRNADGLGNALRKIAVLSDKGFSGAYIGHRNAEQLSH 305

Query: 263 SGISGRQSWL--GLFSSHPPLESRI 285
             +S  +  L  G F++HPPL+ R+
Sbjct: 306 LFVSAVRPHLMAGFFATHPPLQERL 330


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 646,435
Number of extensions: 25759
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 2
Length of query: 292
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 210
Effective length of database: 917,867
Effective search space: 192752070
Effective search space used: 192752070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)