BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1821.p (323 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981055|ref|YP_001351702.1| response regulator/GGDEF domain... 135 4e-33 gi|152982609|ref|YP_001351719.1| hypothetical protein mma_0029 [... 127 8e-31 gi|152982153|ref|YP_001353313.1| diguanylate cyclase [Janthinoba... 109 2e-25 gi|152982100|ref|YP_001354823.1| hypothetical protein mma_3133 [... 105 4e-24 gi|152983039|ref|YP_001352601.1| sensory box protein [Janthinoba... 103 1e-23 >gi|152981055|ref|YP_001351702.1| response regulator/GGDEF domain-containing protein [Janthinobacterium sp. Marseille] Length = 341 Score = 135 bits (340), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 75/178 (42%), Positives = 107/178 (60%) Query: 143 EKMLRSHSEALKRQAGTDGLTGIHNRRHFDEHYAQALQRAREQAGTLSLFMIDVDFFKQY 202 ++ L+ + L+R TDGLTGI NRR+FD++ + +RAR + LS+ +IDVD FK Y Sbjct: 160 QQQLQKSNFELQRLTNTDGLTGIANRRYFDDYLSAEWKRARREQQELSILLIDVDNFKLY 219 Query: 203 NDHYGHGAGDHVLKGVAAALRGQLRQPGDLLARYGGEEFILLMQDLTHEQAAELGQALRQ 262 ND YGH AGD VLK VA +L +P DL AR+GGEEF +++ A G+ + Sbjct: 220 NDTYGHVAGDLVLKQVAKSLEASAMRPADLSARFGGEEFAIILPATGSNGAVISGKKVCA 279 Query: 263 AVYQLDEPHAKSLVEHRVTISVGVCTRVVQEDEDGRLLMAAADAALYRAKLGGRNKVV 320 AV L PHA + + +T+SVG T Q ++ L+ AD LYRAK G+++V+ Sbjct: 280 AVEALRIPHAHAAIGEWLTVSVGAATITPQAEQVPNDLIELADKRLYRAKELGKHRVI 337 >gi|152982609|ref|YP_001351719.1| hypothetical protein mma_0029 [Janthinobacterium sp. Marseille] Length = 313 Score = 127 bits (319), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 72/193 (37%), Positives = 104/193 (53%), Gaps = 9/193 (4%) Query: 135 DASNSVRREKMLRSHSEALKRQAGTDGLTGIHNRRHFDE----HYAQALQRAREQAGTLS 190 D + + E L + L+ + DGLTG+ NRR FD +A A+ R LS Sbjct: 125 DINERKKTEAKLIDLQKELETLSFKDGLTGVANRRMFDSVLELEWANAMNSKR----PLS 180 Query: 191 LFMIDVDFFKQYNDHYGHGAGDHVLKGVAAALRGQLRQPGDLLARYGGEEFILLMQDLTH 250 + ++D+D+FKQYNDHYGH GDH LK VA L + D R+GGEEFIL++ + Sbjct: 181 IILLDIDYFKQYNDHYGHIQGDHCLKQVAKTLNNAAIRQRDFFGRFGGEEFILILPETNE 240 Query: 251 EQAAELGQALRQAVYQLDEPHAKSLVEHRVTISVGVCTRVVQEDEDGRLLMAAADAALYR 310 + A + + R +++ PH KS V +TIS+GV T + ++ + AD LY Sbjct: 241 KSALTVAERCRMLIFKEQIPHEKSAVSQLLTISLGVHTVIPSYGDEALKFIEEADRRLYL 300 Query: 311 AKLGGRNKVVAID 323 AK GRN +A+D Sbjct: 301 AKQKGRN-CIAVD 312 >gi|152982153|ref|YP_001353313.1| diguanylate cyclase [Janthinobacterium sp. Marseille] Length = 605 Score = 109 bits (272), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 70/180 (38%), Positives = 95/180 (52%), Gaps = 4/180 (2%) Query: 142 REKMLRSHSEALKRQAGTDGLTGIHNRRHFDEHYAQALQRAREQAGTLSLFMIDVDFFKQ 201 R LR + +R + D LTG NRR+F+E A + R LS+ D+D FKQ Sbjct: 430 RTAELRKARDEAERLSRVDALTGAFNRRYFNEVAALEFAKVRRLHQPLSVISFDIDLFKQ 489 Query: 202 YNDHYGHGAGDHVLKGVAAALRGQLRQPGDLLARYGGEEFILLMQDLTHEQAAELGQALR 261 ND+YGH AGD V+K A R +R+ D +AR GGEEF +L+ T EQAA + LR Sbjct: 490 INDNYGHAAGDEVIKAAARVSRNAVREI-DFVARIGGEEFAILLPGSTIEQAAATAERLR 548 Query: 262 QAVYQLDEPHAKSLVEHRVTISVGVCTRVVQEDEDGRLLMAAADAALYRAKLGGRNKVVA 321 + V + L+ T S GV ++ D+ L+ AD +YRAK GRN+V A Sbjct: 549 ELVIAEQVSYQGKLLAF--TASFGVA-QLKDSDQSFEALLQRADEMMYRAKNLGRNRVAA 605 >gi|152982100|ref|YP_001354823.1| hypothetical protein mma_3133 [Janthinobacterium sp. Marseille] Length = 352 Score = 105 bits (261), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 66/178 (37%), Positives = 103/178 (57%), Gaps = 8/178 (4%) Query: 149 HSEALKRQAGTDGLTGIHNRRHFDEHYAQALQRAREQAGTLSLFMIDVDFFKQYNDHYGH 208 ++E L+ TD LTG++NRR+ + + + R + LS ID+D FK+ ND++GH Sbjct: 176 NNERLQHIGLTDPLTGVNNRRYVERRLLEEVGRTQRHGYALSGMYIDLDHFKKVNDNFGH 235 Query: 209 GAGDHVLKGVAAALRGQLRQPGDLLARYGGEEFILLMQDLTHEQAAELGQALRQAVYQLD 268 GD VL VA ++ +LR D L R+GGEEF++L+ D + A + + +R +V + Sbjct: 236 QGGDEVLCEVANRIKAELRL-SDALGRFGGEEFVVLLIDAPLDAALVVAERIRASVSE-- 292 Query: 269 EPHAKSLVEH-RVTISVGVCTRVVQEDED----GRLLMAAADAALYRAKLGGRNKVVA 321 P S E R T+S+GV + + +D + L+A AD ALY+AK GRNKV++ Sbjct: 293 RPIVLSSGEELRATVSIGVASLNTADRQDSAAVAQQLLAKADLALYQAKKEGRNKVIS 350 >gi|152983039|ref|YP_001352601.1| sensory box protein [Janthinobacterium sp. Marseille] Length = 914 Score = 103 bits (258), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 66/178 (37%), Positives = 95/178 (53%), Gaps = 6/178 (3%) Query: 147 RSHSEALKRQAGTDGLTGIHNRRHFDEHYAQALQRAREQAGTLSLFMIDVDFFKQYNDHY 206 ++H E L R A D LT + NR H +AL A E+ +L++ ID+D FK ND Sbjct: 472 KAHEEELHRLATKDTLTNLPNRYWLMNHLPKALNEANEKQDSLAVLFIDLDDFKNINDTL 531 Query: 207 GHGAGDHVLKGVAAALRGQLRQPGDLLARYGGEEFILLMQDLT-HEQAAELGQALRQAVY 265 GH +GD +L+ VA+ L LR PGD + R GG+EF LL++ L E + + + Q Sbjct: 532 GHSSGDSLLQVVASRLESVLR-PGDSVVRLGGDEFTLLLESLPLQEDISLIANRIMQTFN 590 Query: 266 QLDEPHAKSLVEHRVTISVGVCTRVVQEDEDGRLLMAAADAALYRAKLGGRNKVVAID 323 Q E K L ++ S+G+ +R + D L+ AD A+Y AK G+NKV D Sbjct: 591 QPFEIQQKMLT---ISASMGI-SRYPFDGRDAETLLKNADIAMYSAKADGKNKVRVYD 644 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.136 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 750,641 Number of extensions: 31711 Number of successful extensions: 167 Number of sequences better than 1.0e-08: 29 Number of HSP's gapped: 134 Number of HSP's successfully gapped: 29 Length of query: 323 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 240 Effective length of database: 914,170 Effective search space: 219400800 Effective search space used: 219400800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)