BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1820.p
         (127 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982458|ref|YP_001353582.1| sensor histidine kinase/respons...    58   2e-10

>gi|152982458|ref|YP_001353582.1| sensor histidine kinase/response
            regulator [Janthinobacterium sp. Marseille]
          Length = 1096

 Score = 57.8 bits (138), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 5/122 (4%)

Query: 8    KTLLIVDDSKVSRMVIKAHVLAVHPDWQVSEAANGEEAIRQVQQGAPDFCTMDINMPGML 67
            +TLL+VDD  V R ++   ++ +   + V EAA+G E I  +Q   PD   +DI M GM 
Sbjct: 890  RTLLVVDDQPVQRHMLSGMLIPL--GFNVREAASGHECIDLLQDFVPDAILLDIGMDGMD 947

Query: 68   GTDAAAQILQSHPAVRIAIFSANVQEAVQTRAQQLGAV-FVAKPVTEKSIAQAL-RHFRG 125
            G + A ++ ++   + I   SA++ E    + +  G   FV KPV E  +  AL R    
Sbjct: 948  GWETARRV-RASSGIPIIFVSADLFENDPVKLKAAGCQDFVGKPVLESELMLALQRQLGL 1006

Query: 126  EW 127
            EW
Sbjct: 1007 EW 1008


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.129    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 262,869
Number of extensions: 8647
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 2
Length of query: 127
Length of database: 1,221,021
Length adjustment: 73
Effective length of query: 54
Effective length of database: 951,140
Effective search space: 51361560
Effective search space used: 51361560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 124 (52.4 bits)