BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1817.p (299 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981531|ref|YP_001354607.1| Signal transduction histidine k... 109 2e-25 gi|152982585|ref|YP_001353143.1| two-component sensor histidine ... 100 2e-22 gi|152982038|ref|YP_001354301.1| signal transduction histidine k... 82 3e-17 gi|152983036|ref|YP_001352598.1| sensory box histidine kinase [J... 80 1e-16 >gi|152981531|ref|YP_001354607.1| Signal transduction histidine kinase [Janthinobacterium sp. Marseille] Length = 354 Score = 109 bits (273), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/282 (28%), Positives = 143/282 (50%), Gaps = 28/282 (9%) Query: 20 HQNSGYLHQTMLLIAAIALASALAVGLAGLLLNLSEHRVAD-------AKLRQLAQRVVH 72 H G L + I +G G+ ++++ ++A+ +LR+L+ + Sbjct: 84 HTEDGTLRWYDTIKTPIRNEQGEVIGTTGISRDITDRKMAEQELLASRTQLRELSAYLQV 143 Query: 73 SQEEERARLSRDLHDGISQWLVSIKLQIEAALERLRGTPEQAAQARSGFEKTATQINGVL 132 +EEER R+SR+LHD + Q L +I++ + + ++ ++ SG +K A + + Sbjct: 144 VREEERTRISRELHDELGQSLTAIRIGLSVIETQHEMHDDEWLKSVSGLKKIA---DSTV 200 Query: 133 AEVRRISHDLRPALLDDLGLAAALEHLCSEWRDSAGSGAGNTAAATQIVFESEGKLGDGT 192 V+RI+ DLRP +LD+LGL A++ L + + + + +T + F E Sbjct: 201 ESVQRIAADLRPLILDELGLLPAMDWLLESFSERSAIAYELSLPSTPLAFSREA------ 254 Query: 193 PLPEVVNTVLFRVAQEALTNIARHAGASQIRMRLYGGSTLLMLQVQDNGCGFDLGRVDDH 252 +T +FR+ QE+LTN++RH+ A+ + + L + L++ DNG G D Sbjct: 255 ------STAIFRILQESLTNVSRHSQATLVGVALKETKDFITLKITDNGKGID----SSV 304 Query: 253 SRH-GIGLRNMRERMEAVGGELAIDSSA-AGTRISAIIARSS 292 SRH +GL MRER +GG+L I S A +GT I I +++ Sbjct: 305 SRHDSLGLLGMRERAFMLGGKLKIQSRAGSGTSIEVRIPKTN 346 >gi|152982585|ref|YP_001353143.1| two-component sensor histidine kinase [Janthinobacterium sp. Marseille] Length = 490 Score = 99.8 bits (247), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/256 (30%), Positives = 128/256 (50%), Gaps = 33/256 (12%) Query: 43 AVGLAGLLLNLSEHRV-------ADAKLRQLAQRVVHSQEEERARLSRDLHDGISQWLVS 95 +V G++ N++ ++ + A+L +L++ V +E+ER R++R++HD + L + Sbjct: 237 SVQWEGIMTNITASKLEQEEIIRSRAQLAELSEHVNTVKEKERTRIAREIHDDLGGNLTA 296 Query: 96 IKLQIEAALERLRGTP----EQAAQARSGFEKTATQINGVLAEVRRISHDLRPALLDDLG 151 IK+ + RL G E+AA S ++T + V RI+ DLRP +LD G Sbjct: 297 IKMALALLTRRLPGKSSELLEKAAYVESLVDRT-------IETVHRIAGDLRPGILD-FG 348 Query: 152 LAAALEHLCSEWRDSAGSGAGNTAAATQIVFESEGKLGDGTPLPEVVNTVLFRVAQEALT 211 L AA++ E+ G + +I + + T LFR+ QEALT Sbjct: 349 LVAAIDWQSKEFEKQLGIPCEFVSNQAEIDLDLDQA------------TALFRIFQEALT 396 Query: 212 NIARHAGASQIRMRLYGGSTLLMLQVQDNGCGFDLGRVDDHSRHGIGLRNMRERMEAVGG 271 NIA+HA AS + ++L + L++ DNG G +L D G+R M ER A+GG Sbjct: 397 NIAKHAQASLVSVQLMHTPQYVRLEIIDNGRGIELA--DRAKPKSFGIRGMVERSVAMGG 454 Query: 272 ELAIDSSAAGTRISAI 287 L++ ++ G + AI Sbjct: 455 SLSVSTAPKGGTVVAI 470 >gi|152982038|ref|YP_001354301.1| signal transduction histidine kinase [Janthinobacterium sp. Marseille] Length = 678 Score = 82.4 bits (202), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 59/228 (25%), Positives = 110/228 (48%), Gaps = 32/228 (14%) Query: 73 SQEEERARLSRDLHDGISQWLVSIKLQIEAALERLRGTPEQAAQARSGFEKTATQINGVL 132 ++EEE+ ++R+LHD + L ++ + + +++ P+ F + + +I +L Sbjct: 456 TREEEKRSIARELHDDLGSALTALNMHLSLLFQQMPPEPK--------FTERSLKIKALL 507 Query: 133 AEV----RRISHDLRPALLDDLGLAAALEHLCSEWRDSAGSGAGNTAAATQIVFESEGKL 188 + + RRI + LRP LD G+ A+ +E+ G + ++++ Sbjct: 508 SSITDATRRIQNGLRPDKLDVFGVKVAIAEQAAEFEKYTGVTCNASLPDDRLIYAPR--- 564 Query: 189 GDGTPLPEVVNTVLFRVAQEALTNIARHAGASQIRMRLYGGSTLLMLQVQDNGCGFDLGR 248 V+ LFR+ QE+L NIA+HA A+ + + L ++L ++DNG G + Sbjct: 565 ---------VDIALFRMVQESLNNIAKHAQATHVDVVLDDTEDEILLTIRDNGVGMPTAQ 615 Query: 249 --VDDHSRHGIGLRNMRERMEAVGGELAIDSSAA-GTRISAIIARSSL 293 V H GLR MRER +GG + + S GT I+ I ++++ Sbjct: 616 SGVMTH-----GLRGMRERAGYLGGSVQVTSVVGRGTTIAISIPKTAV 658 >gi|152983036|ref|YP_001352598.1| sensory box histidine kinase [Janthinobacterium sp. Marseille] Length = 626 Score = 80.5 bits (197), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 113/216 (52%), Gaps = 21/216 (9%) Query: 63 LRQLAQRVVHSQEEERARLSRDLHDGISQWLVSIKLQIEA-ALERLRGTPEQAAQARSGF 121 LRQLA R S E+ER ++R+LHD ++Q L ++++ + LE + + QA + Sbjct: 415 LRQLADRSETSIEDERKHIARELHDDLAQHLSALRMNVSVMKLEFGHLSSAFSGQAETMI 474 Query: 122 EKTATQINGVLAEVRRISHDLRPALLDDLGLAAALEHLCSEWRDSAGSGAGNTAAATQIV 181 E+ ++ + R + LRP LD +G+ ALE L ++ + + + ++ Sbjct: 475 ER----LDATIKIARNVITALRPTALD-MGIVQALEWLVKDF-------STHKEISCRLH 522 Query: 182 FESEGKLGDGTPLPEVVNTVLFRVAQEALTNIARHAGASQIRMRLYGGSTLLMLQVQDNG 241 E + L + T +FR+AQE+L NI+RHA A + + L + +L ++D+G Sbjct: 523 IHDENLI-----LSDRSATAIFRIAQESLRNISRHAEACNVDVNLSHKDGMCLLAIRDDG 577 Query: 242 CGFDLGRVDDHSRHGIGLRNMRERMEAVGGELAIDS 277 GF+ V +S GL ++ER+ +GG++ I+S Sbjct: 578 RGFNTTNVPFNS---FGLMGIKERVLILGGKVEIES 610 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.133 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 531,513 Number of extensions: 16962 Number of successful extensions: 82 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 74 Number of HSP's successfully gapped: 4 Length of query: 299 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 216 Effective length of database: 914,170 Effective search space: 197460720 Effective search space used: 197460720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)