BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1815.p
         (205 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982696|ref|YP_001352779.1| phosphoglycerate mutase family ...   160   7e-41

>gi|152982696|ref|YP_001352779.1| phosphoglycerate mutase family
           protein [Janthinobacterium sp. Marseille]
          Length = 184

 Score =  160 bits (404), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 87/198 (43%), Positives = 120/198 (60%), Gaps = 15/198 (7%)

Query: 1   MQLYLIRHPQPLLDKHTCYGRSDIAVAPAMLAQCVTQLLPALQALPPGLAMVSSPLRRCA 60
           M LYL+RHP+P++  +TCYGR+D+AVA   LA     LLP L   P    + SSPLRRC 
Sbjct: 1   MHLYLVRHPRPIVAANTCYGRTDLAVAAEELASAHASLLPVL---PRNAMVFSSPLRRCM 57

Query: 61  DLAQALAEQLSWPAPALEPRLQEMDFGNWELRPWDDIPWAEVEAWNADLLHHAPGGGETL 120
           DL+++LA+ L    P  + RL EM FG+WE+R WDDIP   ++AW+ D++ + PGGGE++
Sbjct: 58  DLSESLAQTLGCAKPTYDERLAEMHFGDWEMRTWDDIPRTAIDAWSQDMVEYQPGGGESV 117

Query: 121 LAVAQRMWQAFASLLAQPAPGAIVICHAGSIRMLQACAAWRAEQGSAPASTPQIFDDIAL 180
           + VA R+      L       AIVICHAG IR+L AC     E G    S P+    +AL
Sbjct: 118 MQVAHRVRAFRDELTELQIEHAIVICHAGIIRLLAAC-----EHG---LSVPE----MAL 165

Query: 181 RAVAQRQEIPYAQVLPLD 198
            A  +  +I Y ++L +D
Sbjct: 166 YAAQKPHKIRYGELLVVD 183


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.133    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 480,024
Number of extensions: 19000
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 126
Effective length of database: 928,958
Effective search space: 117048708
Effective search space used: 117048708
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)