BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1814.p
         (275 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980635|ref|YP_001352778.1| cobalamin (5'-phosphate) syntha...   270   9e-74

>gi|152980635|ref|YP_001352778.1| cobalamin (5'-phosphate) synthase
           [Janthinobacterium sp. Marseille]
          Length = 270

 Score =  270 bits (689), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 142/253 (56%), Positives = 182/253 (71%)

Query: 17  LYQLRLFFIAVQFFTRLPIPRWVGFQSEWLQRCTRYFPLVGWLVAWVCALVYLLAVQFWP 76
           L+QLRLFFIA+QFFTR+P+PRWVGF  +WLQ  +RYFP VG +VA    +VY++A   W 
Sbjct: 16  LHQLRLFFIALQFFTRIPVPRWVGFDVQWLQHASRYFPAVGIVVALASIVVYIIASLLWT 75

Query: 77  HTLAVLLSTAVGIWLTGAFHEDGFADVCDGLGGAVSRERALEIMRDSRLGSYGVLGIMLL 136
            ++AVLLST  GI+LTGAFHEDGFAD CDGLGG  + ER LEIM+DSR+G+YG +GI L+
Sbjct: 76  QSIAVLLSTIAGIYLTGAFHEDGFADTCDGLGGGGTPERVLEIMKDSRIGAYGAIGIGLM 135

Query: 137 LAIKVAALNALLPLQVLAALGMAHPLSRWLATCLIWRMDYVRQEGKAKPLAQHMGHGEFL 196
           LA+K  AL++L    V++AL +AHPLSR  A  L+WRM+Y +  GKAKP+AQ M + EF 
Sbjct: 136 LALKWMALSSLPSPAVVSALLIAHPLSRLAAISLVWRMEYAKANGKAKPIAQQMSNREFG 195

Query: 197 LALVCAALPVIGVIALGMMAWQRIVAGIVLAVLATVWLARRLQRRLGGYTGDGLGAVQQL 256
           +A     LP+  +   G++    +  GI  A LA  WLAR  QRR+ GYTGD LGAVQQ+
Sbjct: 196 IAAGTTFLPIALLCLTGLLPVSGVACGIFFAALAAFWLARLFQRRIAGYTGDTLGAVQQV 255

Query: 257 SEAAFYLGALATL 269
           +E AFYLG L  +
Sbjct: 256 AEVAFYLGVLTVI 268


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.330    0.142    0.474 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 725,677
Number of extensions: 30937
Number of successful extensions: 171
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 193
Effective length of database: 917,867
Effective search space: 177148331
Effective search space used: 177148331
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)