BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1812.p
         (324 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980997|ref|YP_001354642.1| two-component hybrid sensor and...    59   3e-10

>gi|152980997|ref|YP_001354642.1| two-component hybrid sensor and
            regulator [Janthinobacterium sp. Marseille]
          Length = 1901

 Score = 59.3 bits (142), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 75/147 (51%), Gaps = 15/147 (10%)

Query: 175  NLEKSAG-HGMRPGAVAIAADDSKVARSLIEQGLRAMEIPFEMHVTGKEAWEKIQKLAAE 233
            NL+ +A   G+R  ++ +  DDS   R + ++ L        +   G +A + +Q +  +
Sbjct: 1763 NLQSAARVQGLRTQSIVMVVDDSLTVRRVTQRLLTREGYQVVLAKDGVDALQHLQSVTPD 1822

Query: 234  ARAEGKPISEKISFVLTDLEMPEMDGFTLTRNIKREDFLKNIPVIIHSSLSGSANEDHVR 293
                          +L D+EMP MDGF LTRNI+ ++  ++IP+I+ +S + S + ++  
Sbjct: 1823 -------------VMLVDIEMPRMDGFDLTRNIRDDERTRDIPIIMITSRTASKHRNYAM 1869

Query: 294  GVGGDAYVAK-FEANELAATIYGVLDK 319
             +G + Y+ K ++ + L   I G + K
Sbjct: 1870 ELGVNEYLGKPYQEDVLLELIAGFVAK 1896


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.133    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 699,134
Number of extensions: 27112
Number of successful extensions: 122
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 241
Effective length of database: 914,170
Effective search space: 220314970
Effective search space used: 220314970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)