BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1809.p
         (621 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980018|ref|YP_001353066.1| excinuclease ABC subunit C [Jan...  1089   0.0  

>gi|152980018|ref|YP_001353066.1| excinuclease ABC subunit C
           [Janthinobacterium sp. Marseille]
          Length = 618

 Score = 1089 bits (2816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/621 (83%), Positives = 569/621 (91%), Gaps = 3/621 (0%)

Query: 1   MSELPASPLPDPREVVLETVARLPHLPGVYRYFDADDNVLYVGKARDLKKRVSSYFQKTL 60
           MSE  A   PDPR +VLETVA+LP+LPGVYRYFDA+DN+LYVGKARDLKKRVSSYF K L
Sbjct: 1   MSETDA---PDPRAIVLETVAKLPNLPGVYRYFDAEDNLLYVGKARDLKKRVSSYFLKNL 57

Query: 61  TSPRIAMMVERIARLETTVTRSEAEALLLENNLIKTLRPRFNILFRDDKSYPYLKLTGHA 120
            SPR A+MVERIARLETTVTRSEAEALLLENNLIKTL+PR+NILFRDDKSYPYLK+TG  
Sbjct: 58  ASPRTALMVERIARLETTVTRSEAEALLLENNLIKTLQPRYNILFRDDKSYPYLKITGQE 117

Query: 121 FPRMAYYRGAVDKRNQYFGPFPNAGAVKESIQILQKVFRLRTCEDTVFANRTRPCLLHQI 180
           +PRMAYYRGAVDK+NQYFGPFP+  AVKES+QILQKVF LRTCED+VFANRTRPCLLHQI
Sbjct: 118 YPRMAYYRGAVDKKNQYFGPFPSGWAVKESMQILQKVFLLRTCEDSVFANRTRPCLLHQI 177

Query: 181 HRCSGPCVNLVSSEDYAIDVENAAKFLRGRQSEVMQALEQKMHAFAADLKFEQAAAVRDQ 240
           HRCSGPCVN +S EDYA+DVENAAKFLRGRQSEV++ L+ KM A+A +LKFEQAA VR+Q
Sbjct: 178 HRCSGPCVNFISKEDYALDVENAAKFLRGRQSEVLETLQGKMLAYAEELKFEQAALVRNQ 237

Query: 241 IGSLSSVLHQQSMETVSDADIDIIAVVVQGGRACVNLAMVRGGRHLGDRAYFPTHVDDAM 300
           I +LS VLHQQSMET  DADIDIIAV+VQGGRACVNLAMVRGGRHLGDRAYFPTHVD+A+
Sbjct: 238 INALSRVLHQQSMETGGDADIDIIAVIVQGGRACVNLAMVRGGRHLGDRAYFPTHVDNAL 297

Query: 301 DTAEDSIEVEVLKAFLAQHYIDKFIPGSLIVGTEFDDPALMLALMEQCGHRIALTFQPQG 360
            +AE+SI  EV+KAFLAQHYI+KFIPG+LI+ TE D+P LMLALMEQCGHRI + FQPQG
Sbjct: 298 ASAEESIATEVMKAFLAQHYIEKFIPGTLILNTEMDEPELMLALMEQCGHRINVVFQPQG 357

Query: 361 QRRQWLEMAAKGAEIALARLLSEQGSQQARTRALAEVLELEREDLDELRAECFDISHTQG 420
           QRRQWLEMA KGAEI+LARLLSEQGSQQARTR L + L ++  DL+  R ECFDISHTQG
Sbjct: 358 QRRQWLEMAHKGAEISLARLLSEQGSQQARTRMLVDALGIDVPDLESFRVECFDISHTQG 417

Query: 421 EATQASCVVFHHHAMQNGEYRRYNINDITPGDDYAAMRQVLTRRYEKVANGEGVMPDIVL 480
           EATQASCVVFHHHAMQNGEYRRYNINDITPGDDYAAMRQVL RRYEKVANG+GVMPD+VL
Sbjct: 418 EATQASCVVFHHHAMQNGEYRRYNINDITPGDDYAAMRQVLLRRYEKVANGDGVMPDVVL 477

Query: 481 IDGGRGQVEMARQVLTELGLDISLIVGVAKGEGRKVGLETLVFADGRAPKELGKESAALM 540
           IDGG+GQVEMARQV  ELGLDISLIVGVAKGEGRKVGLETLVF DGR P+ELGKES ALM
Sbjct: 478 IDGGKGQVEMARQVFVELGLDISLIVGVAKGEGRKVGLETLVFVDGRPPQELGKESGALM 537

Query: 541 LIAQIRDEAHRFAITGMRAKRAKARQSSRLEEIEGIGAKRRQRLLVRFGGLRGVADASVD 600
           LIAQIRDEAHRFAITGMRAKRAKARQ+SRLEEIEGIGAKRRQ+LL RFGGLRGV DAS++
Sbjct: 538 LIAQIRDEAHRFAITGMRAKRAKARQTSRLEEIEGIGAKRRQKLLARFGGLRGVVDASIE 597

Query: 601 ELASVEGISRQLAEEIYRQLH 621
           +LASVEGISRQLAE+IY+QLH
Sbjct: 598 DLASVEGISRQLAEDIYKQLH 618


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.136    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,266,350
Number of extensions: 49156
Number of successful extensions: 148
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1,221,021
Length adjustment: 89
Effective length of query: 532
Effective length of database: 891,988
Effective search space: 474537616
Effective search space used: 474537616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)