BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1806.p
         (257 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981183|ref|YP_001353063.1| pyridoxine 5'-phosphate synthas...   363   e-102

>gi|152981183|ref|YP_001353063.1| pyridoxine 5'-phosphate synthase
           [Janthinobacterium sp. Marseille]
          Length = 255

 Score =  363 bits (931), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/250 (79%), Positives = 216/250 (86%)

Query: 1   MSFLQPAGPSIELGINIDHVATLRNARGTRYPDPIRAALEAEEAGADAITLHLREDRRHI 60
           MSFLQPA   I+LGINIDHVATLRNARGT YPDP++AAL AEEAGADAITLHLREDRRHI
Sbjct: 1   MSFLQPASTIIDLGINIDHVATLRNARGTVYPDPLQAALLAEEAGADAITLHLREDRRHI 60

Query: 61  RDDDVKAIRPLLQTRMNLEAAVTKEMIDFACAIQPQDVCLVPEKRTEVTTEGGLDVRGHF 120
           +D DV+ IRP L TRMNLE+AVT EM+DFAC I+PQDVCLVPE+R EVTTEGGLD+  +F
Sbjct: 61  KDADVELIRPKLLTRMNLESAVTTEMVDFACRIKPQDVCLVPERREEVTTEGGLDIVKYF 120

Query: 121 SDVQAAIAQLQQERIRVSLFIDADIEQIQAAAESGAPVIELHTGRYADATSAQEQQEELE 180
             V AAI QLQ E IRVSLFIDAD EQIQAAAE+GAPVIELHTGRYADA  A +QQ ELE
Sbjct: 121 DVVAAAIRQLQAEGIRVSLFIDADAEQIQAAAEAGAPVIELHTGRYADAHDAAQQQAELE 180

Query: 181 RIRAAVHEGVKLGLKVNAGHGLHYTNVQAIAAIPQIAELNIGHAVVAHAVFAGWRNAVSE 240
           R+R  V EG+  GLKVNAGHGLHYTNVQAIAAIP IAELNIGHA+VAHAVF GW+NAV E
Sbjct: 181 RVRRGVAEGMARGLKVNAGHGLHYTNVQAIAAIPDIAELNIGHAIVAHAVFVGWQNAVRE 240

Query: 241 MKAIMVKARL 250
           MKAIM+ ARL
Sbjct: 241 MKAIMIAARL 250


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.132    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 480,745
Number of extensions: 15784
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 176
Effective length of database: 921,564
Effective search space: 162195264
Effective search space used: 162195264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)