BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1805.p
         (288 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980172|ref|YP_001353062.1| DNA repair protein RecO [Janthi...   397   e-112

>gi|152980172|ref|YP_001353062.1| DNA repair protein RecO
           [Janthinobacterium sp. Marseille]
          Length = 287

 Score =  397 bits (1019), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/255 (76%), Positives = 217/255 (85%), Gaps = 3/255 (1%)

Query: 34  APARKPATPRARSRAVPEKEHKVLAQPGFVLHSYPYKETSLIIDVFSRDHGRVALVAKGA 93
           A + K A  RAR+   PEKE ++  QPGFVLHSYPYKETSLI+DVFSRDHGR+ALVAKGA
Sbjct: 36  AKSSKAAPRRART---PEKEFRIADQPGFVLHSYPYKETSLIVDVFSRDHGRIALVAKGA 92

Query: 94  KRPHSKLRGALQTFQPLSLSWSGKSEVRTLTDAEWVGGLLPLEKSALLCGFYLNELLVKL 153
           KRPHSKLRG LQTFQPLS+ WSGK+EVRTLT AEWVGGLLPLEKSALLCGFYLNELLVKL
Sbjct: 93  KRPHSKLRGVLQTFQPLSVGWSGKAEVRTLTAAEWVGGLLPLEKSALLCGFYLNELLVKL 152

Query: 154 LAREDAHPALFDHYVATLNKLAHGENAPIVLRQFERILLKQTGVAGNWSHCVVSGKAVQP 213
           LAR+D HPALFDHYV+ LN+LAH E APIVLR+FER LLK+TGVA +W  C  SGKA+  
Sbjct: 153 LARDDPHPALFDHYVSALNQLAHDEPAPIVLRKFERALLKETGVASDWRVCTASGKAIVL 212

Query: 214 DGIYVVDPEQGTRPERLSDRAPKVSGKTLLDMEREDYSDPTTQLQSKFLMRYLLAHHLGG 273
           + IYV+DPE+G RP R +D  P+VSGKTLLDME EDY+D  TQ QSKFLMR+LLAHHL G
Sbjct: 213 EQIYVLDPERGPRPARPADVWPRVSGKTLLDMENEDYTDTQTQTQSKFLMRFLLAHHLNG 272

Query: 274 AQLNTRQILIDLMQL 288
           A LNTRQILIDL+QL
Sbjct: 273 APLNTRQILIDLLQL 287


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 642,750
Number of extensions: 24962
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 206
Effective length of database: 917,867
Effective search space: 189080602
Effective search space used: 189080602
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)