BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1804.p
         (306 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981217|ref|YP_001353061.1| GTP-binding protein Era [Janthi...   525   e-150
gi|152981181|ref|YP_001355383.1| tRNA modification GTPase TrmE [...    68   6e-13
gi|152981185|ref|YP_001353813.1| GTP-binding protein EngA [Janth...    65   5e-12

>gi|152981217|ref|YP_001353061.1| GTP-binding protein Era
           [Janthinobacterium sp. Marseille]
          Length = 300

 Score =  525 bits (1351), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 247/293 (84%), Positives = 273/293 (93%)

Query: 14  SDYRCGYIAIVGRPNVGKSTLMNVLVGAKVSITSRKAQTTRHRITGIQTIENTQYVYVDT 73
           S +RCGYIAIVGRPNVGKSTLMN L+GAKVSITSRKAQTTRHRITGIQT+E+ Q+VYVDT
Sbjct: 8   SHFRCGYIAIVGRPNVGKSTLMNELIGAKVSITSRKAQTTRHRITGIQTVEDAQFVYVDT 67

Query: 74  PGFQTRHSNALNKTLNRTVTNTLTAADVILFVIEAGTFGPADKQVLDLLPANVPCILVLN 133
           PGFQTRHSNALNKTLNRTVTNTLTAADVIL+VIEAGTFG AD+QVLDL+P NVPCILV+N
Sbjct: 68  PGFQTRHSNALNKTLNRTVTNTLTAADVILYVIEAGTFGQADQQVLDLIPKNVPCILVIN 127

Query: 134 KADRNKDKTTLMPFAREVASHHDFAAVVPVSAKQRFQLDRLQEEVRKLLPQNPPMFDEDD 193
           K+DR KDK  L+PFA+++A+  DF AVVPVSAK RFQL+ LQ E++K LP+ PP+F EDD
Sbjct: 128 KSDRVKDKAVLLPFAQQIAAKRDFTAVVPVSAKLRFQLEGLQGEIKKYLPEGPPIFGEDD 187

Query: 194 ITDRSEKFLASEIVREKVFRFVGEELPYTSTVLIEKFEQEGNLRRIFAAILVERDNHKAM 253
           ITDRSEKFLA+EIVREKVFRFVG+ELPYTSTVLIEKFE EGNLRR+FAAILVERD HK+M
Sbjct: 188 ITDRSEKFLAAEIVREKVFRFVGDELPYTSTVLIEKFEVEGNLRRVFAAILVERDTHKSM 247

Query: 254 VIGQKGARLKEISTQSRLDMERLFGGPVYLEIWVKVKSGWADNEAGLRAYGYE 306
           VIG KGARLK+ISTQ+RLDMERLFGGPVYLEIWVKVKSGWADNEAGLRAYGYE
Sbjct: 248 VIGNKGARLKDISTQARLDMERLFGGPVYLEIWVKVKSGWADNEAGLRAYGYE 300


>gi|152981181|ref|YP_001355383.1| tRNA modification GTPase TrmE
           [Janthinobacterium sp. Marseille]
          Length = 465

 Score = 68.2 bits (165), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 89/169 (52%), Gaps = 19/169 (11%)

Query: 21  IAIVGRPNVGKSTLMNVLVGAKVSITSRKAQTTRHRITGIQTIENTQYVYVDTPGFQTRH 80
           I + G+PNVGKS+L+N L G+ V+I +  A TTR ++     IE      +DT G +   
Sbjct: 226 IVLAGQPNVGKSSLLNALAGSDVAIVTAIAGTTRDKVIETIQIEGIPVNVIDTAGIRDA- 284

Query: 81  SNALNKTLNRTVTNTLTA---ADVILFVIEAGTFGP--ADKQVLDLLPANVPCILVLNKA 135
           S+A ++     +  T  A   ADVI+ +++A   GP  AD+Q+++  P N+P + + NK 
Sbjct: 285 SDATDEVERIGIERTWAAVKTADVIIHMLDANR-GPTRADEQIVERFPENIPVMRIWNKI 343

Query: 136 DRNKDKTTL--MPFAREVASHHDFAAVVPVSAKQRFQLDRLQEEVRKLL 182
           D +  +  +  MP      S H +     VSA     +D L+ E+ +L+
Sbjct: 344 DLSGHRPAIDRMP-----DSTHIY-----VSATDLQGMDLLRGELLRLI 382


>gi|152981185|ref|YP_001353813.1| GTP-binding protein EngA
           [Janthinobacterium sp. Marseille]
          Length = 447

 Score = 65.1 bits (157), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 105/230 (45%), Gaps = 23/230 (10%)

Query: 21  IAIVGRPNVGKSTLMNVLVGAKVSITSRKAQTTRHRITGIQTIENTQYVYVDTPGFQTRH 80
           IA++GRPNVGKSTL N L  ++ ++ +     TR R  G   +    ++ +DT GF+   
Sbjct: 5   IALIGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPFLVIDTGGFEPVA 64

Query: 81  SNALNKTLNRTVTNTLTAADVILFVIEA-GTFGPADKQVLDLL-PANVPCILVLNKADRN 138
              +   + +     +  ADV++F+++      P DK + D L  +    +LV+NKA+  
Sbjct: 65  KEGIMHEMAKQTKQAVAEADVVIFIVDGRQGLTPHDKTITDFLRKSGRSVMLVVNKAEGM 124

Query: 139 KDKTTLMPFAREVASHHDFAAVVPVSAKQRFQLDRLQEEVRKL-LPQNPPMFDEDDITDR 197
           K  T    F  E+     +     +SA     ++ L EE   +   Q PP  +     DR
Sbjct: 125 KYTTVTADFY-ELGMGDPYV----ISAAHGDGVNDLVEEALNIAFAQRPPEEEAPASNDR 179

Query: 198 SEKF------------LASEIVREKVFRFVGEELPYTSTVLIE-KFEQEG 234
           S K             L + ++ E+  R +  +LP T+   IE  FE++G
Sbjct: 180 SIKLAIVGRPNVGKSTLVNTLLGEE--RVIAFDLPGTTRDSIEIPFERDG 227


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.134    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 677,518
Number of extensions: 25599
Number of successful extensions: 135
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 3
Length of query: 306
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 223
Effective length of database: 914,170
Effective search space: 203859910
Effective search space used: 203859910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)