BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1803.p
         (334 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981163|ref|YP_001353060.1| ribonuclease III [Janthinobacte...   455   e-129

>gi|152981163|ref|YP_001353060.1| ribonuclease III
           [Janthinobacterium sp. Marseille]
          Length = 322

 Score =  455 bits (1170), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 217/250 (86%), Positives = 233/250 (93%)

Query: 1   MDPQLLQQRLGHTFKDAALLQQALTHRSHSALHNERLEFLGDSVLNCVVASLLFERYDKI 60
           MD  LLQ RLGHTFKDA LLQQALTHRSH ++HNERLEFLGDS+LNCVVASLLF+RY KI
Sbjct: 1   MDLTLLQNRLGHTFKDAVLLQQALTHRSHGSVHNERLEFLGDSILNCVVASLLFDRYSKI 60

Query: 61  DEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 120
           DEGDLSRLRANLVKQQSLYEIAQRLELS FLRLGEGELKSGGFRRPSILADTLEALFGAI
Sbjct: 61  DEGDLSRLRANLVKQQSLYEIAQRLELSHFLRLGEGELKSGGFRRPSILADTLEALFGAI 120

Query: 121 FLDSGFEAARAVIRSLYVPVLEHVDPKTLGKDAKTLLQEFLQGKKIPLPQYNVIATHGAA 180
           FLD+GF+ AR VIR+LY+P+L+ VDPKTLGKDAKTLLQE+LQGKKI LPQYNV+ATHGAA
Sbjct: 121 FLDAGFDTARDVIRALYIPILDSVDPKTLGKDAKTLLQEYLQGKKIALPQYNVVATHGAA 180

Query: 181 HSQEFEIECLVPKLDIQVFGTGGSRRAGEQAAAKLALEAVQLALAKTPSASRKPRTRTTQ 240
           H+QEFEIECLVPKLDIQVFGTGGSRRAGEQAAAKLALEAVQ A  KTP+ASRK + RT Q
Sbjct: 181 HNQEFEIECLVPKLDIQVFGTGGSRRAGEQAAAKLALEAVQAAFVKTPAASRKAKPRTAQ 240

Query: 241 LKLAGIATIQ 250
           LKLAGIAT+Q
Sbjct: 241 LKLAGIATVQ 250


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.314    0.129    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 679,899
Number of extensions: 25550
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 250
Effective length of database: 910,473
Effective search space: 227618250
Effective search space used: 227618250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 130 (54.7 bits)