BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1802.p
         (304 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980359|ref|YP_001353058.1| signal peptidase I [Janthinobac...   442   e-125

>gi|152980359|ref|YP_001353058.1| signal peptidase I
           [Janthinobacterium sp. Marseille]
          Length = 307

 Score =  442 bits (1137), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 208/307 (67%), Positives = 253/307 (82%), Gaps = 7/307 (2%)

Query: 2   QALLGNFALILFVLMLVTGVIWFADTFFLSKQRRARADAALAEFDARVARDEAQGIKRDG 61
           Q +LGNF+LILF+LM+ TG++WF D  +L KQRRA+ADA LAEFDAR A+   +GIK D 
Sbjct: 4   QDILGNFSLILFILMVGTGIVWFLDVLYLKKQRRAKADAVLAEFDARNAKLAGEGIKPDN 63

Query: 62  SVASSRADLQAHHLKQPAWIEYSGSFFPVIALVFCLRSFLYEPFKIPSSSMVPTLLVGDL 121
           +    RA L+A  L+QPAWIEYSGSFFPVIALVF LRSFLYEPFKIPS+SMVPTL VGDL
Sbjct: 64  T---GRAALEASLLRQPAWIEYSGSFFPVIALVFFLRSFLYEPFKIPSTSMVPTLQVGDL 120

Query: 122 ILVNKFTYGIRLPIINKKIIEVGEPQRGDVMVFKFPKDPSVDYIKRVVGVPGDKIVYKNK 181
           ILVNK+ YGIRLPIINKKII++G PQRGDVMVFK+P++ ++DYIKRVVGVPGD + Y+NK
Sbjct: 121 ILVNKYQYGIRLPIINKKIIDIGNPQRGDVMVFKYPENMALDYIKRVVGVPGDTVTYRNK 180

Query: 182 RLTINGEQISYKALPDYLDQENLTYYKQWQENLTGVEHKILTDERAPNFVPNPDAFPHHE 241
           RL +NG+ +SYK LPDYLD+E L+Y K   E+L GV H+IL + RAP++V NP  FP+ +
Sbjct: 181 RLIVNGQPVSYKPLPDYLDEETLSYSKHLSEDLNGVAHQILNNPRAPSYVANPHDFPNRD 240

Query: 242 LCTYNADGFACTVPPGEYFMMGDNRDNSLDSRYWGFVPDQNIVGKAFFVWMNL----GDI 297
           LCTY+ +GF C VP G+YFMMGDNRDNSLDSRYWGFVPD+NIVGKAFF+W+NL     ++
Sbjct: 241 LCTYDVEGFTCKVPAGQYFMMGDNRDNSLDSRYWGFVPDKNIVGKAFFIWLNLNNFPSNL 300

Query: 298 TRIGSFH 304
            RIG+F 
Sbjct: 301 GRIGNFQ 307


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.141    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 713,577
Number of extensions: 28920
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 221
Effective length of database: 914,170
Effective search space: 202031570
Effective search space used: 202031570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)