BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1801.p (597 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981046|ref|YP_001353057.1| GTP-binding protein LepA [Janth... 1127 0.0 gi|152980795|ref|YP_001354182.1| GTP-binding elongation factor [... 188 1e-48 gi|152979791|ref|YP_001352764.1| peptide chain release factor 3 ... 102 7e-23 gi|152980195|ref|YP_001355104.1| EF-G elongation factor [Janthin... 91 1e-19 gi|152980794|ref|YP_001354185.1| translation initiation factor I... 88 2e-18 >gi|152981046|ref|YP_001353057.1| GTP-binding protein LepA [Janthinobacterium sp. Marseille] Length = 597 Score = 1127 bits (2914), Expect = 0.0, Method: Compositional matrix adjust. Identities = 540/597 (90%), Positives = 576/597 (96%) Query: 1 MNNIRNFSIIAHIDHGKSTLADRIIQLCGGLSNREMEAQVLDSMDIERERGITIKAQTAA 60 MNNIRNFSIIAHIDHGKSTLADRIIQLCGGLS+REMEAQVLDSMDIERERGITIKAQTAA Sbjct: 1 MNNIRNFSIIAHIDHGKSTLADRIIQLCGGLSDREMEAQVLDSMDIERERGITIKAQTAA 60 Query: 61 LAYKAKDGQIYNLNLIDTPGHVDFSYEVSRSLSACEGALLVVDASQGVEAQTVANCYTAL 120 L YKA+DGQ+YNLNLIDTPGHVDFSYEVSRSLSACEGALLVVDASQGVEAQTVANCYTAL Sbjct: 61 LMYKARDGQVYNLNLIDTPGHVDFSYEVSRSLSACEGALLVVDASQGVEAQTVANCYTAL 120 Query: 121 DLGVEVVPVLNKIDLPSADPDNAKSEIEDVIGIDASDATPCSAKTGLGVEDVLEAIVAKV 180 DLGVEVVPVLNKIDLPSADP NA +EIE+VIGIDAS+A CSAKTGLGV+DVLE+++ KV Sbjct: 121 DLGVEVVPVLNKIDLPSADPANAIAEIEEVIGIDASEAVHCSAKTGLGVQDVLESLITKV 180 Query: 181 PAPKGDPDAPLQALIIDSWFDNYVGVVMLVRIVNGTLRPKDKILLMATETQYLTESIGVF 240 P PKGD APLQALI+DSWFDNYVGVVMLVR++NGTLRPKDKILLMA+E+Q+L ES+GVF Sbjct: 181 PPPKGDATAPLQALIVDSWFDNYVGVVMLVRVMNGTLRPKDKILLMASESQHLVESVGVF 240 Query: 241 TPKSQSRESLTAGQVGFVIAGIKELKSARVGDTITLAGKPAAAPLPGFKEVQPQVFAGLF 300 TPKS SR++LTAGQVGF+IAGIKELK+A+VGDT+TLA +PAA PLPGFKEVQPQVFAGLF Sbjct: 241 TPKSISRDTLTAGQVGFIIAGIKELKAAKVGDTVTLASRPAAEPLPGFKEVQPQVFAGLF 300 Query: 301 PVEANQYDALRDSLEKLKLNDAALMYEPEVSQALGFGFRCGFLGLLHMEIVQERLEREFD 360 PVEANQYDALRDSLEKLKLNDAALMYEPEVSQALGFGFRCGFLGLLHMEIVQERLEREFD Sbjct: 301 PVEANQYDALRDSLEKLKLNDAALMYEPEVSQALGFGFRCGFLGLLHMEIVQERLEREFD 360 Query: 361 MDLITTAPTVVYEVQQRDGTLLMVDNPSKMPEVSKIEEIREPIVTVNLYMPQEYVGSVIT 420 MDLITTAPTV+YEV RDG++LMVDNPSKMP+ SKIEEIREPIVTVNLYMPQEYVGSVIT Sbjct: 361 MDLITTAPTVIYEVVLRDGSILMVDNPSKMPDPSKIEEIREPIVTVNLYMPQEYVGSVIT 420 Query: 421 LCTQKRGIQMNMSYHGKQVQLTYEMPMAEIVLDFFDRLKSTSRGYASMDYEFKEYRAADV 480 LCTQKRGIQM+MSYHGKQV+L YEMPMAEIVLDFFD+LKSTSRGYASMDYEFKEYR++DV Sbjct: 421 LCTQKRGIQMDMSYHGKQVKLIYEMPMAEIVLDFFDKLKSTSRGYASMDYEFKEYRSSDV 480 Query: 481 VKVDMLINSEKVDALAIIVHRAAAQIRGRQVAAKMRELIPRQMFDVAIQAAIGATIISRE 540 VKVDMLINSEKVDALAIIVHRA +Q RGR VAAKMRELIPRQMFDVAIQAAIGA IISRE Sbjct: 481 VKVDMLINSEKVDALAIIVHRANSQYRGRAVAAKMRELIPRQMFDVAIQAAIGANIISRE 540 Query: 541 NVKAMRKNVLAKCYGGDISRKRKLLEKQKAGKKRMKQVGSVEIPQEAFLAILQVEDK 597 NVKA+RKNVLAKCYGGDISRKRKLLEKQKAGKKRMKQVGSVEIPQEAFLAILQV+DK Sbjct: 541 NVKALRKNVLAKCYGGDISRKRKLLEKQKAGKKRMKQVGSVEIPQEAFLAILQVDDK 597 >gi|152980795|ref|YP_001354182.1| GTP-binding elongation factor [Janthinobacterium sp. Marseille] Length = 612 Score = 188 bits (477), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 173/547 (31%), Positives = 265/547 (48%), Gaps = 79/547 (14%) Query: 4 IRNFSIIAHIDHGKSTLADRIIQLCGGL-SNREMEAQVLDSMDIERERGITIKAQTAALA 62 IRN +IIAH+DHGK+TL D++++ G N++++A+V+DS DIE+ERGITI ++ A+ Sbjct: 8 IRNIAIIAHVDHGKTTLVDQLLRQSGTFRENQQVDARVMDSNDIEKERGITILSKNCAVE 67 Query: 63 YKAKDGQIYNLNLIDTPGHVDFSYEVSRSLSACEGALLVVDASQGVEAQTVANCYTALDL 122 YK ++N++DTPGH DF EV R LS + LL+VDA +G QT AL L Sbjct: 68 YKGT-----HINIVDTPGHADFGGEVERVLSMVDSVLLLVDAQEGPMPQTRFVTRKALAL 122 Query: 123 GVEVVPVLNKIDLPSADPD---NAKSEIEDVIG-IDASDATPCSAKTGL----GVED--- 171 G++ + V+NKID +ADP NA E+ D +G D P +G G+ED Sbjct: 123 GLKPIVVVNKIDRENADPQKAVNATFELFDKLGATDEQLDFPIVYASGFKGYAGLEDTVR 182 Query: 172 ------VLEAIVAKVPAPKGDPDAPLQALIIDSWFDNYVGVVMLVRIVNGTLRP-KDKIL 224 + +AI+ VPA + DPDAPLQ I + +YVG + + RI+ G ++ +D + Sbjct: 183 DGNMEPLFDAILEHVPAREDDPDAPLQLQITSLEYSSYVGKIGVGRILAGRVKALQDVVW 242 Query: 225 LMATETQYLTESIG-VFTPKSQSR---ESLTAGQVGFVIAGIKELKSARVGDTITLAGKP 280 + E + I V T K R + AG + +I GI+E+ +G TI P Sbjct: 243 MNGPEDKPTKARINQVLTFKGLDRVLVDEALAGDI-VLINGIEEIS---IGSTICAVDAP 298 Query: 281 AAAPLPGFKEVQPQVFAGLF----PVEANQ-----YDALRDSLEK-LKLNDAALMYEPEV 330 LP K +P + P+ + +RD LEK LK N A + + E Sbjct: 299 NG--LPMLKVDEPTLTMNFMVNSSPLAGREGKFVTTRQIRDRLEKELKANMALRVVQSED 356 Query: 331 SQALGFGFRCGFLGLLHMEIVQERLEREFDMDLITTAPTVVYEVQQRDGTLLMVDNPSKM 390 + + G LH+ I+ E + RE ++ + P VV++ MVD Sbjct: 357 DDST---YEVSGRGELHLTILIENMRRE-GFEMAVSRPRVVFK---------MVDGVR-- 401 Query: 391 PEVSKIEEIREPIVTVNLYMPQEYVGSVITLCTQKRGIQMNMSYHGK-QVQLTYEMPMAE 449 EP + + + + G V+ ++RG NM GK +V+L Y +P A Sbjct: 402 ---------HEPYENLTVDVEEVNQGGVMEELGRRRGDLQNMEPDGKGRVRLEYRIP-AR 451 Query: 450 IVLDFFDRLKSTSRGYASMDYEFKEYRAADVVKVDM-------LINSEKVDALAIIVHRA 502 ++ F + +RG M + F EY D K D+ LI+ + A+A + + Sbjct: 452 GLIGFQGEFMTLTRGTGLMSHVFDEYAPVDNTKGDLGGRRNGVLISQDDGAAVAYAIWK- 510 Query: 503 AAQIRGR 509 Q RGR Sbjct: 511 -LQDRGR 516 >gi|152979791|ref|YP_001352764.1| peptide chain release factor 3 [Janthinobacterium sp. Marseille] Length = 556 Score = 102 bits (254), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 94/171 (54%), Gaps = 15/171 (8%) Query: 5 RNFSIIAHIDHGKSTLADRI------IQLCGGLSNREMEAQVL-DSMDIERERGITIKAQ 57 R F II+H D GK+TL +++ IQL G + R+ D MDIE++RGI++ + Sbjct: 36 RTFGIISHPDAGKTTLTEKLLLFSGAIQLAGTVKGRKSGRHATSDWMDIEKQRGISVASS 95 Query: 58 TAALAYKAKDGQIYNLNLIDTPGHVDFSYEVSRSLSACEGALLVVDASQGVEAQTVANCY 117 Y+ + +NL+DTPGH DFS + R L+A + AL+V+DA++GVE QT+ Sbjct: 96 VMQFEYRD-----HVVNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVEEQTIKLLN 150 Query: 118 TALDLGVEVVPVLNKIDLPSADPDNAKSEIEDVIGIDASDATPCSAKTGLG 168 ++ +NK+D + DP E+E V+ I+ + P + G+G Sbjct: 151 VCRMRNTPIITFMNKLDRETRDPLELLDELESVLKIECA---PVTWPIGMG 198 >gi|152980195|ref|YP_001355104.1| EF-G elongation factor [Janthinobacterium sp. Marseille] Length = 702 Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 88/178 (49%), Gaps = 10/178 (5%) Query: 5 RNFSIIAHIDHGKSTLADRIIQLCG---GLSNREMEAQVLDSMDIERERGITIKAQTAAL 61 RN I AHID GK+T +R++ G L A +D M+ E+ERGITI + Sbjct: 11 RNIGISAHIDAGKTTTTERVLFYTGVNHKLGEVHDGAATMDWMEQEQERGITITSAATTC 70 Query: 62 AYKAKDGQI--YNLNLIDTPGHVDFSYEVSRSLSACEGALLVVDASQGVEAQTVANCYTA 119 +K G +++N+IDTPGHVDF+ EV RS+ +GA +V A GV+ Q+ A Sbjct: 71 FWKGMAGNFPAHHINIIDTPGHVDFTIEVERSMRVLDGACMVYCAVGGVQPQSETVWRQA 130 Query: 120 LDLGVEVVPVLNKIDLPSADPDNAKSEIEDVIGIDASDATPCSAKTGLGVEDVLEAIV 177 V + +NK+D A+ ++ + A P + +G ED E ++ Sbjct: 131 NKYKVPRLAFVNKMDRTGANFFKVYDQMRARL-----KANPVPMQVPIGAEDSFEGVI 183 >gi|152980794|ref|YP_001354185.1| translation initiation factor IF-2 [Janthinobacterium sp. Marseille] Length = 937 Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 112/231 (48%), Gaps = 41/231 (17%) Query: 8 SIIAHIDHGKSTLADRIIQL------CGGLSNREMEAQVLDSMDIERERGITIKAQTAAL 61 +++ H+DHGK++L D I + GG++ Q + + +E RG+ Sbjct: 443 TVMGHVDHGKTSLLDYIRRAKVASGEAGGIT------QHIGAYHVETPRGM--------- 487 Query: 62 AYKAKDGQIYNLNLIDTPGHVDFSYEVSRSLSACEGALLVVDASQGVEAQTVANCYTALD 121 + +DTPGH F+ +R A + +LVV A GV QT A Sbjct: 488 -----------ITFLDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQTKEAIAHAKA 536 Query: 122 LGVEVVPVLNKIDLPSADPDNAKSEI--EDVI----GIDASDATPCSAKTGLGVEDVLEA 175 GV +V +NKID P A+ D K E+ E V+ G D S P SAKTG G++ +LE Sbjct: 537 AGVPLVVAINKIDKPGANMDRVKQELIAEQVVPEEYGGD-SPFVPVSAKTGEGIDALLEQ 595 Query: 176 IV--AKVPAPKGDPDAPLQALIIDSWFDNYVGVVMLVRIVNGTLRPKDKIL 224 ++ A+V K DAP + L++++ D G V + + +GTL+ D +L Sbjct: 596 VLLQAEVLELKAPVDAPARGLVVEAKLDKGRGPVATILVQSGTLKRGDVVL 646 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.135 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,207,177 Number of extensions: 46705 Number of successful extensions: 158 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 148 Number of HSP's successfully gapped: 7 Length of query: 597 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 508 Effective length of database: 891,988 Effective search space: 453129904 Effective search space used: 453129904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)