BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1792.p (251 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein... 409 e-115 gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Jant... 187 4e-49 gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reduc... 130 9e-32 gi|152980322|ref|YP_001353173.1| 3-hydroxybutyrate dehydrogenase... 115 3e-27 gi|152982900|ref|YP_001352586.1| short chain dehydrogenase [Jant... 113 1e-26 >gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein] reductase [Janthinobacterium sp. Marseille] Length = 247 Score = 409 bits (1050), Expect = e-115, Method: Compositional matrix adjust. Identities = 203/250 (81%), Positives = 226/250 (90%), Gaps = 4/250 (1%) Query: 1 MSAQNLQGQVALVTGASRGIGRAIATELAKQGAKVVGTATSESGAVAITEYLAALGPEAG 60 M+ +L GQVALVTGASRGIGRAIA ELAK GAKV+GTATSESGA AI+EYL G Sbjct: 1 MTTVDLSGQVALVTGASRGIGRAIAQELAKLGAKVIGTATSESGAAAISEYLG----NGG 56 Query: 61 RGAVLNVNDAQASVALVEQVQKEFGALSILVNNAGITQDQLAMRMKEEEWDSVIATNLTA 120 +G VL+VNDA SVAL++++QKEFGA+SILVNNAGITQDQLAMRMK+EEWDSVIATNLTA Sbjct: 57 KGVVLDVNDAARSVALIDEIQKEFGAVSILVNNAGITQDQLAMRMKDEEWDSVIATNLTA 116 Query: 121 VGRLSRAVLRGMMKARSGRIINITSVVGEAGNPGQMNYAAAKAGVAGMSRALAREVGSRN 180 VGRLSRAVLRGMMKA++GRIINITSVVG +GN GQMNYAAAKAGVAGMSRALARE+GSRN Sbjct: 117 VGRLSRAVLRGMMKAKTGRIINITSVVGSSGNAGQMNYAAAKAGVAGMSRALAREIGSRN 176 Query: 181 ITVNCVAPGFIDTDMTKALSEQQSAAILQQIPLARLGAAEEIAYAVAFLASPQAAYITGT 240 ITVNC+APGFIDTDMTK LSEQQ AA+LQQ+PL RLG E+IA AV+FLASPQA+YITGT Sbjct: 177 ITVNCIAPGFIDTDMTKTLSEQQIAALLQQVPLGRLGVPEDIAAAVSFLASPQASYITGT 236 Query: 241 TLNVNGGMYM 250 TL+VNGGMYM Sbjct: 237 TLHVNGGMYM 246 >gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Janthinobacterium sp. Marseille] Length = 246 Score = 187 bits (476), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 107/246 (43%), Positives = 156/246 (63%), Gaps = 7/246 (2%) Query: 9 QVALVTGASRGIGRAIATELAKQGAKVVGTATSESGAVAITEYLAALGPEAG---RGAVL 65 ++ALVTG G+G AI +LA G +VV T G E+L L E+G Sbjct: 3 RLALVTGGMGGLGEAICIKLAALGYQVV--TTYSPGNKKADEWLK-LMKESGYDFHAYPC 59 Query: 66 NVNDAQASVALVEQVQKEFGALSILVNNAGITQDQLAMRMKEEEWDSVIATNLTAVGRLS 125 +V+D ++ V Q++KE G + +LVNNAGIT+D +M + +WD+V+ATNL +V ++ Sbjct: 60 DVSDYDSAQQCVAQIEKEMGPVDVLVNNAGITRDITFKKMGKPDWDAVMATNLDSVFNMT 119 Query: 126 RAVLRGMMKARSGRIINITSVVGEAGNPGQMNYAAAKAGVAGMSRALAREVGSRNITVNC 185 + V GM++ GRIINI+SV G+ G GQ NY+AAKAG+ G ++ALA EV + +TVN Sbjct: 120 KPVCDGMVERGWGRIINISSVNGQKGAFGQTNYSAAKAGMHGFTKALALEVARKAVTVNT 179 Query: 186 VAPGFIDTDMTKALSEQ-QSAAILQQIPLARLGAAEEIAYAVAFLASPQAAYITGTTLNV 244 ++PG+I T M A+ + I+ QIP+ RLG EEIA VA+LAS +AA++TG + + Sbjct: 180 ISPGYIGTKMVMAIPQDVLDTKIVPQIPMGRLGKPEEIAGLVAYLASDEAAFLTGANIAI 239 Query: 245 NGGMYM 250 NGG +M Sbjct: 240 NGGQHM 245 >gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reductase family oxidoreductase [Janthinobacterium sp. Marseille] Length = 249 Score = 130 bits (326), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 100/258 (38%), Positives = 138/258 (53%), Gaps = 21/258 (8%) Query: 1 MSAQN-LQGQVALVTGASRGIGRAIATELAKQGAKVVGT-ATSESGAVAITEYLAALGPE 58 MS N L G+VA V G SRGIG AI LA+ GA V T +S A A+ + + A G Sbjct: 1 MSNTNQLTGKVAFVQGGSRGIGAAIVKRLARDGAAVAFTYVSSADKAKAVAQEIEAAG-- 58 Query: 59 AGRGAVLNVN--DAQASVALVEQVQKEFGALSILVNNAGITQDQLAMRMKEEEWDSVIAT 116 GR ++ + DA A ++ K FG + ILVNNAG+ K E++D +A Sbjct: 59 -GRALAIHADSSDASAVQQAIQAAAKAFGRIDILVNNAGVLALAPVEDFKLEDFDRTVAV 117 Query: 117 NLTAVGRLSRAVLRGMMKARSGRIINITSVVGEAGNPGQMN------YAAAKAGVAGMSR 170 N+ +V ++ R M GRII I S N +M YA +KA + G+++ Sbjct: 118 NVRSVFVATQEAARHM--GEGGRIITIGST-----NADRMPFAGGAVYAMSKAAIVGLTK 170 Query: 171 ALAREVGSRNITVNCVAPGFIDTDMTKALSEQQSAAILQQIPLARLGAAEEIAYAVAFLA 230 LAR++G R ITVN V PG +DTDM A S+ + + + R G EEIA VA+LA Sbjct: 171 GLARDLGPRGITVNNVQPGPVDTDMNPANSDFAD-TLKGLMAIGRYGKDEEIASFVAYLA 229 Query: 231 SPQAAYITGTTLNVNGGM 248 P+A YITG +L ++GG Sbjct: 230 GPEAGYITGASLTIDGGF 247 >gi|152980322|ref|YP_001353173.1| 3-hydroxybutyrate dehydrogenase [Janthinobacterium sp. Marseille] Length = 264 Score = 115 bits (287), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 82/263 (31%), Positives = 127/263 (48%), Gaps = 17/263 (6%) Query: 1 MSAQNLQGQVALVTGASRGIGRAIATELAKQGAKVVGTATSESGAVAITEYLAALGPEAG 60 M L G+ ALVTG++ GIG IA LA+QGA +V ++ + + AAL G Sbjct: 1 MQKAPLHGKTALVTGSTSGIGLGIAQALAQQGADIVLNGFGDANEIKTLQ--AALMRNYG 58 Query: 61 RGAVLNVNDAQASV---ALVEQVQKEFGALSILVNNAGITQDQLAMRMKEEEWDSVIATN 117 V + D A++ ++FG + ILVNNAGI + E+WD++IA N Sbjct: 59 VKCVHHPADMSKPAEIEAMMAFAAQQFGRVDILVNNAGIQHTETIEDFPVEKWDAIIAIN 118 Query: 118 LTAVGRLSRAVLRGMMKARSGRIINITSVVGEAGNPGQMNYAAAKAGVAGMSRALAREVG 177 L++ +R L M GRIINI SV G G+ + Y AAK G+ G+++ A E+ Sbjct: 119 LSSAFHTTRLALPMMQAKNWGRIINIASVHGLVGSVQKSAYVAAKHGIVGLTKVTALEMA 178 Query: 178 SRNITVNCVAPGFIDTDMTK----------ALSEQQSAAIL--QQIPLARLGAAEEIAYA 225 IT N + PG++ T + + LS++ + L ++ P +++ Sbjct: 179 HTGITCNAICPGWVLTPLVQKQVDARAAREGLSDEAAKKDLVSEKQPSGEFVTPQQLGAL 238 Query: 226 VAFLASPQAAYITGTTLNVNGGM 248 FL S A + G N++GG Sbjct: 239 AVFLCSEAAVQVRGAAWNMDGGW 261 >gi|152982900|ref|YP_001352586.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 278 Score = 113 bits (282), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 85/241 (35%), Positives = 125/241 (51%), Gaps = 7/241 (2%) Query: 12 LVTGASRGIGRAIATELAKQGAKVVGTATSESGAVAITEYLAALGPEAGRGAVLNVNDAQ 71 L+TGA GIGRA A A++G +V + E A+ L ALG EA + +V Sbjct: 36 LITGALTGIGRATAFAFAREGYRVAVSGRREEAGNALAAELRALGNEA-EFLLADVRFEA 94 Query: 72 ASVALVEQVQKEFGALSILVNNAGITQDQLAMRMKEE--EWDSVIATNLTAVGRLSRAVL 129 LVEQ FG + + VNNAG T+ QLA +++ + N+ + + Sbjct: 95 DVRNLVEQTVVRFGRIDVAVNNAG-TEGQLAPIVEQSAANYAETFGVNVLGTMLSLKHEM 153 Query: 130 RGMMKARSGRIINITSVVGEAGNPGQMNYAAAKAGVAGMSRALAREVGSRNITVNCVAPG 189 R M+ SG IIN++SV G+ G G Y A+K V G++++ A E + + VN VAPG Sbjct: 154 RVMLAQGSGSIINLSSVAGKVGIAGASVYVASKHAVEGLTKSAALEGAAAGVRVNAVAPG 213 Query: 190 FIDTDMTKAL---SEQQSAAILQQIPLARLGAAEEIAYAVAFLASPQAAYITGTTLNVNG 246 + T+M SE+ A L IP R +EIA + FLAS + +Y+TG ++ V+G Sbjct: 214 PVATEMLDRFVGGSEENKAGFLATIPAGRAATPDEIAQTIVFLASDKVSYLTGQSIAVDG 273 Query: 247 G 247 G Sbjct: 274 G 274 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.314 0.127 0.339 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 523,379 Number of extensions: 20481 Number of successful extensions: 186 Number of sequences better than 1.0e-08: 23 Number of HSP's gapped: 136 Number of HSP's successfully gapped: 23 Length of query: 251 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 170 Effective length of database: 921,564 Effective search space: 156665880 Effective search space used: 156665880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)