BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1790.p
         (328 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980023|ref|YP_001353046.1| 3-oxoacyl-(acyl carrier protein...   535   e-153

>gi|152980023|ref|YP_001353046.1| 3-oxoacyl-(acyl carrier protein)
           synthase III [Janthinobacterium sp. Marseille]
          Length = 328

 Score =  535 bits (1379), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 253/328 (77%), Positives = 291/328 (88%)

Query: 1   MTTYSKIVGTGSYLPTKRVTNHELAAQLAEQGIETSDEWIVTRSGISARHYAEPAQLSSD 60
           MT YSKI+GTGSYLP  RVTN EL AQLA  GIETSDEWIV+RSGISARHYA+    SSD
Sbjct: 1   MTIYSKIIGTGSYLPPNRVTNQELTAQLASNGIETSDEWIVSRSGISARHYADAGVQSSD 60

Query: 61  LALQAAQRALEAAGMQANDIDLIIMATSTPDHLGGFPSTACVVQRKLGITNGAPAMDVQA 120
           LA++AA+RALE A +  +D+DLII+ATSTPD  GGFPSTACVVQRKLGITN   A+DVQA
Sbjct: 61  LAVEAAKRALEMAKLGVDDVDLIILATSTPDFFGGFPSTACVVQRKLGITNDCAAVDVQA 120

Query: 121 VCSGFVYAMSVADSFIKSGAHKNVLVIGAEVFSRILDFKDRTTCVLFGDGAGAIVMSAAQ 180
           VCSGFVYA+S+AD+FIK+G HKNVLVIGAEVFSRI+DF+DRTTCVLFGDGAGA++M+A+Q
Sbjct: 121 VCSGFVYAVSIADNFIKAGTHKNVLVIGAEVFSRIIDFEDRTTCVLFGDGAGAVLMTASQ 180

Query: 181 EPGVLATKLHADGSHGHILCVPGSVNNGVVAGSAYLYMDGPAVFKLAVSLLDKVAREALE 240
           EPGVLATKLHA+G++G ILC+PG V+ GVV GSA+LYMDGPAVFKLAVS+LDKVA EALE
Sbjct: 181 EPGVLATKLHANGNYGDILCLPGKVSKGVVEGSAFLYMDGPAVFKLAVSVLDKVAHEALE 240

Query: 241 AAQMQSTDVDWLVPHQANIRIMQGTAKKMGLPPEKMVVTVAEHGNTSAASIPLALDQAVR 300
            A MQS++VDW++PHQANIRIMQ TAKK+GL  +KM+VTV +HGNTSAASIP+ALD  VR
Sbjct: 241 IAGMQSSEVDWIIPHQANIRIMQSTAKKLGLGMDKMIVTVDQHGNTSAASIPMALDVGVR 300

Query: 301 DGRIKPGHTVLMEGVGGGFTWGAVLVRM 328
           DGRIKPG  V+MEGVGGGFTWGAVL RM
Sbjct: 301 DGRIKPGQNVMMEGVGGGFTWGAVLARM 328


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 731,354
Number of extensions: 27544
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 244
Effective length of database: 910,473
Effective search space: 222155412
Effective search space used: 222155412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)