BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1786.p
         (212 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981405|ref|YP_001353042.1| nucleotide-binding protein impl...   289   9e-80
gi|152981387|ref|YP_001352228.1| nucleotide-binding protein impl...    68   3e-13

>gi|152981405|ref|YP_001353042.1| nucleotide-binding protein
           implicated in inhibition of septum formation
           [Janthinobacterium sp. Marseille]
          Length = 204

 Score =  289 bits (739), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 152/194 (78%), Positives = 167/194 (86%)

Query: 12  RLILGSSSIYRKELLSRLGLPFETMAPDIDESPQPGESPQATALRLAHQKAGAIAARVGA 71
           RLILGSSS+YRKELLSRLGLPFE M+PDIDE+  PGE+P ATALRLA QKA AIAAR   
Sbjct: 9   RLILGSSSVYRKELLSRLGLPFEVMSPDIDETALPGETPAATALRLAQQKAAAIAARAPD 68

Query: 72  ALVIGSDQVATLDGQQIGKPGNHANALKQLQWMRGREVIFHTALCLWDGRRADAATAAQV 131
           ALVIGSDQVATLDG QIGKPGNHANAL+QLQ MRGREVIFHTALCL+DGR   ++   Q+
Sbjct: 69  ALVIGSDQVATLDGAQIGKPGNHANALRQLQTMRGREVIFHTALCLFDGRSGISSPQIQL 128

Query: 132 CNVQTLVRFRNLDDAELEAYLRIEQPYDCAGSAKNEGLGIAILDSIHSDDPTALTGLPLI 191
            N+QT V FR+L DAEL+AYLRIEQPYDCAGSAKNEGLGIAIL+ I S DPTALTGLPLI
Sbjct: 129 DNIQTFVTFRDLPDAELDAYLRIEQPYDCAGSAKNEGLGIAILEKISSSDPTALTGLPLI 188

Query: 192 ALTSMLRQAGVKFF 205
           ALT MLR+A + FF
Sbjct: 189 ALTGMLRRANISFF 202


>gi|152981387|ref|YP_001352228.1| nucleotide-binding protein
           implicated in inhibition of septum formation
           [Janthinobacterium sp. Marseille]
          Length = 206

 Score = 68.2 bits (165), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 96/219 (43%), Gaps = 34/219 (15%)

Query: 7   NPSQVRLILGSSSIYRKELLSRLGLPFETM--------APDIDESPQPGESPQATALRLA 58
            P   ++ L S S  R+ELL ++G+ FE +         P++ E   P E  +    R+ 
Sbjct: 2   KPLPKKIYLASKSPRRRELLRQMGIEFELLLLRDQTPRGPEVSEIVLPNERAEDYVARVT 61

Query: 59  HQKAGAIAA-----RVGAALVIGSDQVATLDGQQIGKPGNHANALKQLQWMRGR--EVIF 111
            +KA          ++    ++ +D    LDG+ +GKP + A A+  L+ + GR  +V+ 
Sbjct: 62  LEKAAFAQKTMWWRKLPVRPILAADTTVVLDGRILGKPADEAEAIDMLRSLSGRTHQVLT 121

Query: 112 HTALCLWDG-----RRADAATAAQVCNVQTLVRFRNLDDAELEAYLRIEQPYDCAGSAKN 166
           H A+ L D      +R+D A AA             L D  + AY    +PYD AG    
Sbjct: 122 HVAVLLDDKTFQLTQRSDVAFAA-------------LPDQVIRAYCATSEPYDKAGGYGI 168

Query: 167 EGLGIAILDSIHSDDPTALTGLPLIALTSMLRQAGVKFF 205
           +G     +  + +   + + GLP+     +L QAG+   
Sbjct: 169 QGQAALFIQDM-AGSYSGIMGLPIFETGKLLEQAGIHIL 206


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 458,417
Number of extensions: 15956
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 2
Length of query: 212
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 133
Effective length of database: 928,958
Effective search space: 123551414
Effective search space used: 123551414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)