BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1785.p
         (72 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983345|ref|YP_001352763.1| hypothetical protein mma_1073 [...    70   3e-14

>gi|152983345|ref|YP_001352763.1| hypothetical protein mma_1073
          [Janthinobacterium sp. Marseille]
          Length = 78

 Score = 69.7 bits (169), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 8/78 (10%)

Query: 1  MSSTSLSPSPTTSAPE-------RPDTPCVAVCSTTF-DDVCRGCGRTVDEVAQWVFMDE 52
          MS+T     P+ + PE       RPD+PC   CST+  D++C+GCGRT DEV  W+  D+
Sbjct: 1  MSNTDNPDDPSANKPEDKPRNTLRPDSPCAGYCSTSHGDEICKGCGRTFDEVINWIIYDD 60

Query: 53 TQREVVWQRILAQGYPRR 70
           ++  VW R+ A G  +R
Sbjct: 61 DEKAAVWARLEAAGLVKR 78


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.130    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 147,135
Number of extensions: 4108
Number of successful extensions: 10
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 72
Length of database: 1,221,021
Length adjustment: 43
Effective length of query: 29
Effective length of database: 1,062,050
Effective search space: 30799450
Effective search space used: 30799450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 122 (51.6 bits)