BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1784.p
         (401 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979863|ref|YP_001353277.1| signal transduction protein [Ja...   459   e-130
gi|152981737|ref|YP_001355197.1| hypothetical protein mma_3507 [...    72   6e-14
gi|152981790|ref|YP_001355352.1| hypothetical protein mma_3662 [...    65   1e-11

>gi|152979863|ref|YP_001353277.1| signal transduction protein
           [Janthinobacterium sp. Marseille]
          Length = 394

 Score =  459 bits (1181), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 230/383 (60%), Positives = 291/383 (75%), Gaps = 2/383 (0%)

Query: 12  FIPARTHVDRFERMRACVGSLFGILMVGLISYALLPHEARTIWLIAPMGASAVLLFAVPS 71
             P    VDR+E+MRAC G+LFG+++ GL SY +L  +    WLIAPMGAS+VLLFAVP+
Sbjct: 12  IFPTPGTVDRYEKMRACAGALFGLVLTGLCSYFILGKDIHAAWLIAPMGASSVLLFAVPA 71

Query: 72  SPLAQPWSIMGGNLCAAVIGVSCARLVQEPALAAALAISLAIGAMFLLRCIHPPSGAVAL 131
           SPLAQPWSIMGGN+ AA+IGV+CA+++ EP LAA +A +LAIGAMF  RCIHPPSGAVAL
Sbjct: 72  SPLAQPWSIMGGNILAAIIGVTCAKMIDEPILAAGVAAALAIGAMFAARCIHPPSGAVAL 131

Query: 132 TAVLGGPAVQQMGYAFVLSPVLLNSALLLAMALFFNNATGRRYPHAQ-QSAAAHPHQTRD 190
           TAVLGGPAV  MGY+FV+ PV LNSALLL  ALF+NNATGRRYPH       A+ H T D
Sbjct: 132 TAVLGGPAVHAMGYSFVIIPVALNSALLLITALFYNNATGRRYPHRPLPPDTANKHNTSD 191

Query: 191 ELPITRLGFSHEDLDEVLKNFNQVLDIGRDDLEEIFMQTEMRAYHRRFGQTLCAAVMSRD 250
             P  R+G +  DLD VL  +NQVLDI RDDLE I +QTEM+AY RR G+T+CAAVMS+D
Sbjct: 192 AAPTERIGIAPADLDAVLTRYNQVLDISRDDLEAIMLQTEMQAYRRRLGETVCAAVMSKD 251

Query: 251 VVAVEFATGLDEAWRLLQQHRLRAMPVLDRGRHVIGIISRSDFLEHAGVQVQSGLAAQLR 310
           VV  EF T L +AW LL+QH L A+PV+DRGRHVIGI++++DFL+HA ++   GLA +L+
Sbjct: 252 VVTAEFGTTLADAWTLLKQHDLTALPVIDRGRHVIGIVTKADFLKHAEIEPHDGLAERLK 311

Query: 311 RLLHRVPFSHSDKPEVVGQIMSRPVITAQVDTPVLELVPRMADG-LHQIPIVQADGKLVG 369
            L+     SH++K EVVGQIM+  V+TA  +  +L+LVP M+D  LHQ+P++   G+LVG
Sbjct: 312 HLITPSMLSHTEKHEVVGQIMTTEVMTADANQSILDLVPLMSDSELHQVPVIDERGRLVG 371

Query: 370 MLTQSDMIAALYEKNLAAARAVP 392
           M++Q+DMIAALYE +L +    P
Sbjct: 372 MISQTDMIAALYEHSLTSEYVKP 394


>gi|152981737|ref|YP_001355197.1| hypothetical protein mma_3507
           [Janthinobacterium sp. Marseille]
          Length = 169

 Score = 72.0 bits (175), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 68/118 (57%), Gaps = 6/118 (5%)

Query: 59  MGASAVLLFAVPSSPLAQPWSIMGGNLCAAVIGVSCARLVQEPALAAALAISLAIGAMFL 118
            GAS VL+F  P SP +QP + +GG+  +++IG+    L      + ALA   AI  M L
Sbjct: 53  FGASCVLIFGFPESPFSQPRNAIGGHFLSSLIGLLFLTLFGAHWWSMALAAGTAIAVMQL 112

Query: 119 LRCIHPPSGAVALTAVLGGPAVQQMGYAFVLSPVLLNSALLLAMALFFNNATGRR-YP 175
            R +HPP+G+  +  +L  PA     ++F+L+P L+ S +++ +A+ FNN    R YP
Sbjct: 113 TRTVHPPAGSNPVIVMLSAPA-----WSFLLTPTLIGSIIVVLVAIVFNNIPKERSYP 165


>gi|152981790|ref|YP_001355352.1| hypothetical protein mma_3662
           [Janthinobacterium sp. Marseille]
          Length = 169

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 80/148 (54%), Gaps = 11/148 (7%)

Query: 29  VGSLFGILMVGLISYALLPHEARTIWLIAPMGASAVLLFAVPSSPLAQPWSIMGGNLCAA 88
           +G  F I ++     AL     + + ++   GAS V++FA+P +PLAQP +++ G+  ++
Sbjct: 29  LGGFFAISVI-----ALAADYTQALLILGSFGASCVIVFALPDTPLAQPRNVILGHFLSS 83

Query: 89  VIGVSCARLVQEPALAAALAISLAIGAMFLLRCIHPPSGAVALTAVLGGPAVQQMGYAFV 148
           + G+    +      A  LA++ AI  M   R +HPP+G+  +   L  P     G++F+
Sbjct: 84  LSGLVYLNVFGPHWWALGLAVATAIIIMMACRVVHPPAGSNPVIVFLAAP-----GWSFL 138

Query: 149 LSPVLLNSALLLAMALFFNNATGR-RYP 175
             P L+ + +L+ +A+ +NN   + +YP
Sbjct: 139 FFPTLIGACILVVVAMIYNNVVRKNKYP 166


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.326    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 863,891
Number of extensions: 33925
Number of successful extensions: 183
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 3
Length of query: 401
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 316
Effective length of database: 906,776
Effective search space: 286541216
Effective search space used: 286541216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)