BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1783.p
         (141 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980213|ref|YP_001353274.1| transcriptional regulator [Jant...   208   1e-55

>gi|152980213|ref|YP_001353274.1| transcriptional regulator
           [Janthinobacterium sp. Marseille]
          Length = 144

 Score =  208 bits (529), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 99/141 (70%), Positives = 119/141 (84%)

Query: 1   MNGTPRLQKDDFEALSEFRYQLRRFLRFSEDAAQSEGLTPLQYLLLLHIKGYPGRDWASI 60
           M+ +  L++ DFEALSEFRYQLRRFL+FSEDAAQS GLTPL YL+LLHIKG+PG+DWA+I
Sbjct: 1   MSKSAALEQADFEALSEFRYQLRRFLKFSEDAAQSAGLTPLHYLVLLHIKGFPGQDWATI 60

Query: 61  SELAERLQAQHHGVVALVTRCVKAGLVTRTPDDRDKRLVQVRLTTLGEQYLHRLAQLHRN 120
            +LAERLQ QHHG VAL++RC KAGLVTR+P   DKR V VRLT +GE+ L  LA+LHRN
Sbjct: 61  GQLAERLQIQHHGAVALISRCEKAGLVTRSPGIHDKRQVCVRLTAVGEKNLRHLAELHRN 120

Query: 121 ELQSLSGVFQVSNISAFNDRD 141
           EL+SLS VF+V+ ISAFND +
Sbjct: 121 ELRSLSNVFKVARISAFNDSE 141


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 310,968
Number of extensions: 11070
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 1,221,021
Length adjustment: 74
Effective length of query: 67
Effective length of database: 947,443
Effective search space: 63478681
Effective search space used: 63478681
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)