BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1781.p (581 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982153|ref|YP_001353313.1| diguanylate cyclase [Janthinoba... 140 3e-34 gi|152982100|ref|YP_001354823.1| hypothetical protein mma_3133 [... 134 1e-32 gi|152980290|ref|YP_001353520.1| hypothetical protein mma_1830 [... 130 2e-31 gi|152982708|ref|YP_001353141.1| hypothetical protein mma_1451 [... 128 1e-30 gi|152982285|ref|YP_001352393.1| diguanylate cyclase [Janthinoba... 119 6e-28 >gi|152982153|ref|YP_001353313.1| diguanylate cyclase [Janthinobacterium sp. Marseille] Length = 605 Score = 140 bits (352), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 80/161 (49%), Positives = 106/161 (65%), Gaps = 4/161 (2%) Query: 413 SNTDFLTGVLNRRAFYSYAEQQLAVAQRYGRPLAVILFDIDHFKRINDSFGHQAGDAILV 472 S D LTG NRR F A + A +R +PL+VI FDID FK+IND++GH AGD ++ Sbjct: 445 SRVDALTGAFNRRYFNEVAALEFAKVRRLHQPLSVISFDIDLFKQINDNYGHAAGDEVIK 504 Query: 473 GAAQCVAQLLRKVDVLARYGGEEFIILLPESGLEQAAAVAEKLRA-ALQERVFDIEAGQQ 531 AA+ +R++D +AR GGEEF ILLP S +EQAAA AE+LR + E+V G+ Sbjct: 505 AAARVSRNAVREIDFVARIGGEEFAILLPGSTIEQAAATAERLRELVIAEQV--SYQGKL 562 Query: 532 IRLSASFGVAGLDDH-EALDRLTKRADLALYRAKRLGRNRV 571 + +ASFGVA L D ++ + L +RAD +YRAK LGRNRV Sbjct: 563 LAFTASFGVAQLKDSDQSFEALLQRADEMMYRAKNLGRNRV 603 >gi|152982100|ref|YP_001354823.1| hypothetical protein mma_3133 [Janthinobacterium sp. Marseille] Length = 352 Score = 134 bits (337), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 72/170 (42%), Positives = 108/170 (63%), Gaps = 6/170 (3%) Query: 408 QLQASSNTDFLTGVLNRRAFYSYAEQQLAVAQRYGRPLAVILFDIDHFKRINDSFGHQAG 467 +LQ TD LTGV NRR +++ QR+G L+ + D+DHFK++ND+FGHQ G Sbjct: 179 RLQHIGLTDPLTGVNNRRYVERRLLEEVGRTQRHGYALSGMYIDLDHFKKVNDNFGHQGG 238 Query: 468 DAILVGAAQCVAQLLRKVDVLARYGGEEFIILLPESGLEQAAAVAEKLRAALQERVFDIE 527 D +L A + LR D L R+GGEEF++LL ++ L+ A VAE++RA++ ER + Sbjct: 239 DEVLCEVANRIKAELRLSDALGRFGGEEFVVLLIDAPLDAALVVAERIRASVSERPIVLS 298 Query: 528 AGQQIRLSASFGVAGLDDHEALD------RLTKRADLALYRAKRLGRNRV 571 +G+++R + S GVA L+ + D +L +ADLALY+AK+ GRN+V Sbjct: 299 SGEELRATVSIGVASLNTADRQDSAAVAQQLLAKADLALYQAKKEGRNKV 348 >gi|152980290|ref|YP_001353520.1| hypothetical protein mma_1830 [Janthinobacterium sp. Marseille] Length = 417 Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 72/170 (42%), Positives = 102/170 (60%), Gaps = 1/170 (0%) Query: 402 REALITQLQASSNTDFLTGVLNRRAFYSYAEQQLAVAQRYGRPLAVILFDIDHFKRINDS 461 +A++ L+ ++N D LT L+R+ + A +Q+ A ++GRPL++++ D+DHFKRIND+ Sbjct: 233 HDAMLANLEDAANHDHLTEALSRKRLEAVAREQILRAGKFGRPLSLLIIDLDHFKRINDT 292 Query: 462 FGHQAGDAILVGAAQCVAQLLRKVDVLARYGGEEFIILLPESGLEQAAAVAEKLRAALQE 521 +GH GD +L A+ LR D L R GGEEF ILLP + A A+A +LR + Sbjct: 293 YGHAGGDEVLREFARMTRASLRDGDALGRLGGEEFGILLPNTDTVGALAIARRLREDSER 352 Query: 522 RVFDIEAGQQIRLSASFGVAGLDDHEALDRLTKRADLALYRAKRLGRNRV 571 + G + S S G+A D E DRL+ RAD ALY AK GRNRV Sbjct: 353 HLISGTFG-ECHYSISIGIATWRDGENFDRLSIRADRALYTAKNSGRNRV 401 >gi|152982708|ref|YP_001353141.1| hypothetical protein mma_1451 [Janthinobacterium sp. Marseille] Length = 528 Score = 128 bits (321), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 65/156 (41%), Positives = 99/156 (63%), Gaps = 1/156 (0%) Query: 416 DFLTGVLNRRAFYSYAEQQLAVAQRYGRPLAVILFDIDHFKRINDSFGHQAGDAILVGAA 475 D LTG LNRR E+++A A R PL + + D+D FK+IND +GH AGD L+ Sbjct: 370 DQLTGSLNRRGLDDVLEREIARADRRASPLCIAMLDLDDFKKINDKYGHMAGDEALIHLV 429 Query: 476 QCVAQLLRKVDVLARYGGEEFIILLPESGLEQAAAVAEKLRAALQERVFDIEAGQQIRLS 535 + + LR +DV+AR+GGEEF+I+LP++ LE+A +L+ L +++F + ++ ++ Sbjct: 430 RVIKDTLRTMDVIARFGGEEFLIVLPDTPLEEAILTITRLQRELTKQIF-MHNHTRLLMT 488 Query: 536 ASFGVAGLDDHEALDRLTKRADLALYRAKRLGRNRV 571 S GVA + E + KRAD+ALY AK+ G+NRV Sbjct: 489 FSAGVALRKEREDQAAMVKRADIALYEAKKAGKNRV 524 >gi|152982285|ref|YP_001352393.1| diguanylate cyclase [Janthinobacterium sp. Marseille] Length = 300 Score = 119 bits (298), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 68/173 (39%), Positives = 98/173 (56%), Gaps = 4/173 (2%) Query: 401 EREALITQLQASSNTDFLTGVLNRRAFYSYAEQQLAVAQRYGRPLAVILFDIDHFKRIND 460 ER L +L+ S+TD LTG+ NRR RY P +V +FD+D+ K+IND Sbjct: 127 ERHILEGKLRELSDTDQLTGLFNRRKLEHDLTLHYESLLRYSVPTSVFIFDLDNLKKIND 186 Query: 461 SFGHQAGDAILVGAAQCVAQLLRKVDVLARYGGEEFIILLPESGLEQAAAVAEKLRAALQ 520 + GH AGD I+ A +RK D R+GG+EF+I LP + LEQA +AE+L + Sbjct: 187 TKGHHAGDEIIQAVADICRSAIRKADTACRFGGDEFVIALPNTELEQAMQLAERLHDRFR 246 Query: 521 ERVFDIEAGQQIRLSASFGVAGL--DDHEALDRLTKRADLALYRAKRLGRNRV 571 + + G + ++AS GV + +D D L KRAD ALY AK +G++R+ Sbjct: 247 KELSRFSVGDTV-VTASIGVTSMVPEDRSYEDTL-KRADRALYEAKSMGKDRI 297 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.136 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,133,352 Number of extensions: 42831 Number of successful extensions: 227 Number of sequences better than 1.0e-08: 29 Number of HSP's gapped: 200 Number of HSP's successfully gapped: 29 Length of query: 581 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 493 Effective length of database: 895,685 Effective search space: 441572705 Effective search space used: 441572705 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 132 (55.5 bits)