BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1780.p (630 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982527|ref|YP_001352848.1| hypothetical protein mma_1158 [... 804 0.0 gi|152982802|ref|YP_001354924.1| hypothetical protein mma_3234 [... 98 2e-21 gi|152981991|ref|YP_001353685.1| hypothetical protein mma_1995 [... 88 1e-18 gi|152981125|ref|YP_001352453.1| sensory box protein [Janthinoba... 85 1e-17 gi|152981029|ref|YP_001354036.1| sensory box/GGDEF family protei... 83 4e-17 >gi|152982527|ref|YP_001352848.1| hypothetical protein mma_1158 [Janthinobacterium sp. Marseille] Length = 658 Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/586 (63%), Positives = 470/586 (80%) Query: 30 ADDPMLSLLHEIIAQRKLSALFQPIVRMRNGEILGYEGLIRGPSNTPLHSPLSLFKVART 89 A+D ++ L E+I R+L+ LFQPI+RM++GEI+GYEGLIRGPS++PLHSPL+LFKVAR+ Sbjct: 55 AEDHLVQRLKEVIEHRQLTPLFQPIIRMQSGEIIGYEGLIRGPSDSPLHSPLNLFKVARS 114 Query: 90 HNLSVQMEYLCRHIVLTRFAQLGLQGNLFLNVSPGALMQPEAIQGETLRYLEKLGVNPQR 149 NLSV++E+LCR I L +FA+L L G LFLNVSP L+QP+ GETL Y+ ++G+NP+R Sbjct: 115 CNLSVEVEHLCRRITLEKFAELRLPGKLFLNVSPECLIQPDVKHGETLGYIHEVGINPER 174 Query: 150 IIIELTENEPTYDYALLRNAAMHYRDMGFQIAIDDLGEGFSSLRLWSELQPEYVKVDMHF 209 +IIELTE++PTYDY LLR A HYR MGF+IAIDDLGEGFSSLRLWSEL+PEYVK+DMHF Sbjct: 175 VIIELTESQPTYDYDLLREAVTHYRAMGFRIAIDDLGEGFSSLRLWSELRPEYVKIDMHF 234 Query: 210 VQGINHDPMKLQFVRSIQEIAEKSGSIVIAEGIESQAELLTIRDLGIACGQGYHISRPLP 269 VQGIN DP+KLQFVRSIQEIAEKSG+IVIAEGIE+ AELL IRDLG+A GQGY I+RP Sbjct: 235 VQGINLDPIKLQFVRSIQEIAEKSGTIVIAEGIETDAELLMIRDLGVAYGQGYKIARPHA 294 Query: 270 EPPMSIPDDVSKTLRRDKVPLAANKYGPGKRSATVAKLLRETQYVSPEVTNDAAYDMFVN 329 P ++ D+ LR + V + ++ G G + T KLLR + V+PEV N+ Y+MF N Sbjct: 295 NPATTLSTDLCNLLRHNGVAVYPHENGRGHKMLTAMKLLRSVKAVAPEVHNNRIYEMFNN 354 Query: 330 DPQLQALPVVSNGLPIGLINRYSMVERFARLYGRELYGKRSCAFFMDPNPILTEQDTSLQ 389 DP L+ +PVVSNG+P+GLI R ++++RFAR Y REL+GK+SC FMD NP++T+++T+L Sbjct: 355 DPTLEVIPVVSNGIPVGLITRANLIDRFARPYLRELHGKKSCTLFMDSNPLITDKNTALH 414 Query: 390 DLSNLLVQAESHHLSNGFIITDRGQYMGLGTGHDLLREITQMQIDAARHANPLTQLPGNV 449 LS ++V A+ HHL NGFIITD GQYMG+G HDL+REITQMQI+AAR+ANPLT LPGNV Sbjct: 415 ALSQIIVDADRHHLFNGFIITDNGQYMGMGNAHDLMREITQMQINAARYANPLTLLPGNV 474 Query: 450 PINDHIEYLLHSGVEFCICYCDLDQFKPFNDVYGYRKGDDMIQATGRLLQQACDPNLDFV 509 PI++HI+ LL +G FC CY DLD FKP+NDVYGYRKGDDM++ TG++L CDP DFV Sbjct: 475 PIDEHIDRLLENGTRFCACYVDLDHFKPYNDVYGYRKGDDMLRLTGKILSGHCDPQKDFV 534 Query: 510 GHIGGDDFLIMFQSEDWEKRCRTMLDNFTAETRGLYYDEDVQRGGYFTEDRQGNRIFHPL 569 GHIGGDDF+I+FQSEDWE+RCR ++D F A Y ED ++GGY +EDR+G ++FH L Sbjct: 535 GHIGGDDFIILFQSEDWEQRCRAIIDAFVAAVPDFYCVEDRKKGGYISEDRRGKQVFHTL 594 Query: 570 VSVSLGAVKIEPSQYSSPHQIASAATRAKKQAKKIQGNSLFIERRI 615 ++SLG VK+EP Y S HQIA+A AKKQAKKI GNSLFI+RR+ Sbjct: 595 ATISLGLVKVEPGHYGSHHQIATATADAKKQAKKIPGNSLFIDRRL 640 >gi|152982802|ref|YP_001354924.1| hypothetical protein mma_3234 [Janthinobacterium sp. Marseille] Length = 558 Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 118/242 (48%), Gaps = 9/242 (3%) Query: 34 MLSLLHEIIAQRKLSALFQPIVRMRNGEILGYEGLIRGPSNTPLHSPLSLF----KVART 89 +L L I + +LS +QP + +R GE+ E L+R + P ++F + + Sbjct: 300 ILGSLMSAIKEGQLSLHYQPKICIRTGEVHSVEALMRWNHPERGNIPPAIFIPRAEQSTL 359 Query: 90 HNLSVQ--MEYLCRHIVLTRFAQLGLQGNLFLNVSPGALMQPEAIQGETLRYLEKLGVNP 147 NL + +E + IVL R Q G+ + +N+SP L+QP L L++ V+ Sbjct: 360 INLITEFALEQAMKQIVLWR--QQGIHLPIAVNISPRNLLQP-GFSDLVLSLLQRYEVSG 416 Query: 148 QRIIIELTENEPTYDYALLRNAAMHYRDMGFQIAIDDLGEGFSSLRLWSELQPEYVKVDM 207 Q + +E+TE D A + I+IDD G G+SSL+ +L +K+D Sbjct: 417 QSLELEVTEGALMTDIARTIIELSRLAEAKITISIDDFGTGYSSLQYLHQLPISLIKIDQ 476 Query: 208 HFVQGINHDPMKLQFVRSIQEIAEKSGSIVIAEGIESQAELLTIRDLGIACGQGYHISRP 267 FV+ + D + V + +A K G IAEG+E Q+ + DLG QGY ISRP Sbjct: 477 SFVRRLPDDKGAVHIVEAAVTLAHKMGMQTIAEGVEEQSAYKLLSDLGCDIAQGYMISRP 536 Query: 268 LP 269 LP Sbjct: 537 LP 538 >gi|152981991|ref|YP_001353685.1| hypothetical protein mma_1995 [Janthinobacterium sp. Marseille] Length = 876 Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/238 (28%), Positives = 120/238 (50%), Gaps = 16/238 (6%) Query: 42 IAQRKLSALFQPIVRMRNGEILGYEGLIRGPSNTP---LHSPLSLFKVARTHNLSV---- 94 + + +LS +QP V + +G + G+E L+R N+P L SP +A T + V Sbjct: 624 LERNELSVAYQPKVLLADGSVQGFELLLRW--NSPEYGLISPNEFIPIAETSGMVVPIGM 681 Query: 95 -QMEYLCRHIVL--TRFAQLGLQGNLFLNVSPGALMQPEAIQGETLRYLEKLGVNPQRII 151 ME C+ + ++ ++G + +NVS L+Q + + L GV PQ + Sbjct: 682 WAMEQACKQLAAWQQQYPEMG-SLTMAINVSMRQLLQT-SFFSQVRDILNSSGVIPQMVE 739 Query: 152 IELTENEPTYD-YALLRNAAMHYRDMGFQIAIDDLGEGFSSLRLWSELQPEYVKVDMHFV 210 +ELTE + + N +M + +G ++A+DD G G+SSL +L + +K+D FV Sbjct: 740 LELTETSAMANPLQTMENLSM-LKKLGVRLALDDFGTGYSSLAYLQKLPIDILKIDKAFV 798 Query: 211 QGINHDPMKLQFVRSIQEIAEKSGSIVIAEGIESQAELLTIRDLGIACGQGYHISRPL 268 +GI + + +R + +A+ AEG+E+ ++ ++ +G GQG+ S PL Sbjct: 799 RGIGSNQSDTEIIRLMMALAQTLNLQTTAEGVETFEQIQELKKMGCNLGQGFLFSAPL 856 >gi|152981125|ref|YP_001352453.1| sensory box protein [Janthinobacterium sp. Marseille] Length = 459 Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/218 (27%), Positives = 108/218 (49%), Gaps = 7/218 (3%) Query: 59 NGEILGYEGLIRGPSNTP-LHSPLSLFKVARTHNLSVQMEYL-----CRHIVLTRFAQLG 112 +G I+G E L+R + SP +A L + + + C ++ Sbjct: 212 DGRIVGAEALLRWRHPVKGMVSPADFIPLAEQTGLILPIGHWVLGMACAQLISWSKHPAT 271 Query: 113 LQGNLFLNVSPGALMQPEAIQGETLRYLEKLGVNPQRIIIELTENEPTYDYALLRNAAMH 172 Q +L +NVS QP+ + + + L++ G +P + +ELTE+ D + Sbjct: 272 AQLSLAINVSALQFKQPDFVS-QVVSVLDRSGADPHLLELELTESMLVNDVNDIIAKMNA 330 Query: 173 YRDMGFQIAIDDLGEGFSSLRLWSELQPEYVKVDMHFVQGINHDPMKLQFVRSIQEIAEK 232 ++ G ++++DD G G+SSL +L + +K+D FV+ + D + VR++ E+A Sbjct: 331 LKEKGLRLSLDDFGTGYSSLSYLKKLPLDQLKIDQSFVRDMLFDSNDVTIVRTVVELARG 390 Query: 233 SGSIVIAEGIESQAELLTIRDLGIACGQGYHISRPLPE 270 G VIAEG+E+Q + + +LG QGY +SRP+P Sbjct: 391 MGLHVIAEGVETQEQRQFLAELGCLSFQGYLLSRPVPN 428 >gi|152981029|ref|YP_001354036.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 641 Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 113/246 (45%), Gaps = 12/246 (4%) Query: 31 DDPMLSLLHEIIAQRKLSALFQPIVRMRNGEILGYEGLIRGPSNTPLHS---PLSLFKVA 87 D +L+ I + +QP V ++ ++G E L+R P H P +A Sbjct: 383 DVELLTRFKRAIRDDEFCLHYQPRVELQEFGLVGLEALVRW--QHPEHGLIFPNDFITLA 440 Query: 88 RTHNLSVQM-----EYLCRHIVLTRFAQLGLQGNLFLNVSPGALMQPEAIQGETLRYLEK 142 ++L V + + CR I R A L L + +NVSP L + A+ + L + Sbjct: 441 EENDLIVLLGRWVIDAACRQIADWRAAGLPLV-PVAINVSPKQL-KDSALLETVMETLAR 498 Query: 143 LGVNPQRIIIELTENEPTYDYALLRNAAMHYRDMGFQIAIDDLGEGFSSLRLWSELQPEY 202 + P + IE+TE D+ R G +IA+DD G GFS L+ +L Sbjct: 499 YQIEPGLLEIEITEGCFIEDFDTANRVLEQLRANGLRIALDDYGTGFSGLKNLKKLPIYA 558 Query: 203 VKVDMHFVQGINHDPMKLQFVRSIQEIAEKSGSIVIAEGIESQAELLTIRDLGIACGQGY 262 +K+D FV+ I +D V S +A G V+AEG+ES+ +L+ ++ G QG+ Sbjct: 559 IKIDRSFVRDIRNDNSDAVIVASTISLAHNLGLQVVAEGVESKEQLVHLKTAGCDQVQGF 618 Query: 263 HISRPL 268 + RP+ Sbjct: 619 YFKRPV 624 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.138 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,508,043 Number of extensions: 64252 Number of successful extensions: 215 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 213 Number of HSP's successfully gapped: 17 Length of query: 630 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 541 Effective length of database: 891,988 Effective search space: 482565508 Effective search space used: 482565508 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)