BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1777.p (313 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980915|ref|YP_001353545.1| LysR family transcriptional reg... 191 4e-50 gi|152980832|ref|YP_001354031.1| LysR family transcriptional reg... 172 2e-44 gi|152980836|ref|YP_001354012.1| LysR family transcriptional reg... 167 1e-42 gi|152982904|ref|YP_001352613.1| LysR family transcriptional reg... 157 1e-39 gi|152981625|ref|YP_001354995.1| LysR family transcriptional reg... 145 2e-36 >gi|152980915|ref|YP_001353545.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 300 Score = 191 bits (486), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 112/302 (37%), Positives = 169/302 (55%), Gaps = 11/302 (3%) Query: 10 LNEMAVFAKVVETGSFSEAARQLGATPSAISRAIARLEKALGTQLLQRTTRKLRLSESGR 69 L+ M VF VV++GS S AA QL + +SR +A LE+ G +LL RTTRKL L+ +G Sbjct: 4 LSAMQVFVTVVDSGSQSAAADQLDLSRPVVSRYLAELEEWAGARLLHRTTRKLSLTAAGA 63 Query: 70 EIHERCRDMLHAAQAVLAVSGSFEAVPQGQVRVSVPKAVGRYLVHPHVPDFLASYPEVDV 129 E+ RCR ML A + V E PQG +R++V + G+ + V D++ YP V V Sbjct: 64 EMLPRCRQMLELATDMKNVVAIPEDAPQGLLRITVSTSFGQSHLAAAVADYVKLYPGVTV 123 Query: 130 LLRLEDRYMDLIDDQVDLAIRITDKPPPGLMGRRLMRIDHLLCATPAYLAAHGTPTHPQA 189 + + DR ++L+++++DLAIRI+ + P L+ RRL ++CA PAYL HG PT + Sbjct: 124 DMLVLDRVVNLVEERIDLAIRISKELDPNLIARRLTVCRSVVCAAPAYLHEHGKPTQAEQ 183 Query: 190 LKAHSCI---YLGEAPADAQWRFRRHGKAVHVEVRGRYAANHTGVRLDAVLRHIGIGSLP 246 L H+C+ Y G W R V+V V+G +AN L A L GI LP Sbjct: 184 LVLHNCLTHSYYGSV-----WLLERDKLPVNVAVKGNISANDASSLLPAALAGAGIAMLP 238 Query: 247 YFIARPALEAGSIVQVLPQWTFRTHYCGDLWALYPATRHLPPRLGAFVNFLAQRLAEEPT 306 F+A P + +G ++ +LP++ + L+ +Y + +H+P L ++FLA R +EP Sbjct: 239 TFLAAPYIRSGQLLPLLPEYHPQEF---GLFGVYASRKHMPATLRTMLDFLAARFTDEPD 295 Query: 307 LD 308 D Sbjct: 296 WD 297 >gi|152980832|ref|YP_001354031.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 304 Score = 172 bits (436), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 105/296 (35%), Positives = 165/296 (55%), Gaps = 8/296 (2%) Query: 10 LNEMAVFAKVVETGSFSEAARQLGATPSAISRAIARLEKALGTQLLQRTTRKLRLSESGR 69 L+++A F+ +V+ GS + AR+LG TP A+++ +A LE+ LG +LL RTTR + ++ G Sbjct: 4 LSDLAFFSVLVKQGSLAAVARELGVTPPAVTKRLANLEQRLGVRLLNRTTRTMSVTHEG- 62 Query: 70 EIH--ERCRDMLHAAQAVLAVSGSFEAVPQGQVRVSVPKAVGRYLVHPHVPDFLASYPEV 127 EI+ E R + + AVS S AVP+G +R++ GR + P V DF+ YPE+ Sbjct: 63 EIYLAEGARILTEIEELERAVSRS-RAVPKGLLRINATFGFGRRHIAPAVSDFIEKYPEI 121 Query: 128 DVLLRLEDRYMDLIDDQVDLAIRITDKPPPGLMGRRLMRIDHLLCATPAYLAAHGTPTHP 187 +V L+L DR +LID D+ IRI + P ++ R++ LLCA PAY+ HGTP+ P Sbjct: 122 EVQLQLSDRPANLIDQAFDIGIRIGEMPDARIIARKIAANRRLLCAAPAYIKRHGTPSVP 181 Query: 188 QALKAHSCIYLGEAPAD-AQWRFRRHGKAVHVEVRGRYAANHTGVRLDAVLRHIGIGSLP 246 + L+ CI L E A W + + ++VRG ++N L L GI Sbjct: 182 RDLQKLQCIVLRENDAAYGSWHLHKGKRQESIKVRGALSSNDGETTLAWALAGHGILMRS 241 Query: 247 YFIARPALEAGSIVQVLPQWTFRTHYCGDLWALYPATRHLPPRLGAFVNFLAQRLA 302 + L +G +V+VL W+ D++A+YP +L ++ AFV+F++ R A Sbjct: 242 QWDVAAYLRSGRLVEVLADWSLPP---SDIYAVYPERLNLSAKVTAFVDFVSARFA 294 >gi|152980836|ref|YP_001354012.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 309 Score = 167 bits (422), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 112/314 (35%), Positives = 165/314 (52%), Gaps = 18/314 (5%) Query: 1 MSTNQSIALLNEMAVFAKVVETGSFSEAARQLGATPSAISRAIARLEKALGTQLLQRTTR 60 M N LL + +F E GSF+ AA G TP+A+SR+I+RLE LG +L RTTR Sbjct: 1 MQRNFDDVLLGSIELFCLAAEAGSFTAAANTAGVTPAAVSRSISRLEARLGVRLFVRTTR 60 Query: 61 KLRLSESGREIHERCRDMLHAAQAVLA---VSGSFEAVPQGQVRVSVPKAVGRYLVHPHV 117 ++RL++ GR E+CR+ L AQ V A VSG + P G +R+SVP G Y + P + Sbjct: 61 QIRLTDGGRVYFEQCREAL--AQLVDAERQVSGG-QLKPAGLLRISVPTPYGHYRLLPLL 117 Query: 118 PDFLASYPEVDVLLRLEDRYMDLIDDQVDLAIRITDKPPPGLMGRRLMRIDHLLCATPAY 177 P+F YP+V V + + +R +D ++ DLAIR L+ R+L + +L A P+Y Sbjct: 118 PEFRQRYPDVQVEVHISNRNIDFAEEAYDLAIRGRAPTDSNLIARKLEEAELVLVAAPSY 177 Query: 178 LAAHGTPTHPQALKAHSCIYLGEAPADAQ---WRF----RRHGKAVHVEVRGRYAANHTG 230 L G P + L+ H CI E P+ + W F + GKAV + G Y+ Sbjct: 178 LKRAGKPKTLEDLQKHECIQF-ELPSTGRRIPWVFHPNGKVQGKAVDIMTNGGYSCAEDV 236 Query: 231 VRLDAVLRH-IGIGSLPYFIARPALEAGSIVQVLPQWTFRTHYCGDLWALYPATRHLPPR 289 + + + R G+ FI L G +V++LPQ+ + LYP RHL R Sbjct: 237 LGIVTLARSGAGLVQTYRFIVEDDLREGRLVELLPQFGATSR---PFILLYPHARHLSSR 293 Query: 290 LGAFVNFLAQRLAE 303 + AFV+FL ++L + Sbjct: 294 VRAFVDFLMEKLVQ 307 >gi|152982904|ref|YP_001352613.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 314 Score = 157 bits (396), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 90/243 (37%), Positives = 139/243 (57%), Gaps = 3/243 (1%) Query: 10 LNEMAVFAKVVETGSFSEAARQLGATPSAISRAIARLEKALGTQLLQRTTRKLRLSESGR 69 MA+ +VV+ GSFS AAR+LG + +SR I LE L T++LQR+TR+L ++E+G+ Sbjct: 5 FESMALLVEVVDAGSFSGAARRLGIPLATVSRKIGELETMLKTRVLQRSTRQLSMTEAGQ 64 Query: 70 EIHERCRDMLHAA-QAVLAVSGSFEAVPQGQVRVSVPKAVGRYLVHPHVPDFLASYPEVD 128 CR +L +A AVSG + A P+G + ++ P GR V P V FL +YP+++ Sbjct: 65 AYVAACRRILEEVDEAERAVSGEY-AAPKGDLVITTPIVFGRKHVMPVVAQFLKAYPDIN 123 Query: 129 VLLRLEDRYMDLIDDQVDLAIRITDKPPPGLMGRRLMRIDHLLCATPAYLAAHGTPTHPQ 188 V + L D + L+++ VD+A+R+ + P ++ R+ I+ ++CA+PAYL +GTP P Sbjct: 124 VRVVLADHVVHLLEEHVDIAVRVGELPDSNMVAARIGTINRVMCASPAYLKKNGTPKKPD 183 Query: 189 ALKAHSCIYLGEAPADAQWRFRRHGKAVHVEVRGRYAANHTGVRLDAVLRHIGIGS-LPY 247 L H CI A W+ +G+ ++V V R N ++A IGI S L Y Sbjct: 184 DLSKHQCITFDGLMAPKLWQLCENGREINVPVFSRVVVNTAEAAIEAAESDIGITSVLCY 243 Query: 248 FIA 250 IA Sbjct: 244 QIA 246 >gi|152981625|ref|YP_001354995.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 145 bits (367), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 97/297 (32%), Positives = 151/297 (50%), Gaps = 10/297 (3%) Query: 10 LNEMAVFAKVVETGSFSEAARQLGATPSAISRAIARLEKALGTQLLQRTTRKLRLSESGR 69 LN++ F +VV+ G F+ A R LG S +SR IA LE+ LG +L+QRTTR+ ++E G+ Sbjct: 4 LNDLYFFVQVVDHGGFAPAGRALGIPKSKLSRRIALLEERLGVRLIQRTTRQFSVTEIGQ 63 Query: 70 EIHERCRDMLHAAQAVLAVSGSFEAVPQGQVRVSVPKAVGRYLVHPHVPDFLASYPEVDV 129 +E C+ ML A+A V A P+G VR+S P + V + DF+A +P V V Sbjct: 64 TYYEHCKAMLVEAEAAQDVIDVTRAEPRGVVRLSCPITLLHAHVSSMLADFMALHPHVTV 123 Query: 130 LLRLEDRYMDLIDDQVDLAIRITDKPPPGLMGRRLMRI----DHLLCATPAYLAAHGTPT 185 L +R +D++ + +D+AIR+ +PPP +MR+ L A+PA H P Sbjct: 124 HLEATNRRVDVVAEAMDIAIRV--RPPPIQDSDLVMRVLSDRGQCLVASPALFNKHALPQ 181 Query: 186 HPQALKAHSCIYLGEAPADAQWR-FRRHGKAVHVEVRGRYAANHTGVRLDAVLRHIGIGS 244 P + + LG W F G V + R+ DA L +GI Sbjct: 182 TPADIAEWPSLALGTPQQTHVWNLFGPDGAHVSLHHHPRFVTGDMMALRDAALAGVGIVQ 241 Query: 245 LPYFIARPALEAGSIVQVLPQWTFRTHYCGDLWALYPATRHLPPRLGAFVNFLAQRL 301 LP + R L AG+++ +LP W R + ++P+ R + P + A +++LA+R Sbjct: 242 LPRMMLREQLAAGTLLSLLPDWAPRREI---VHVVFPSRRGVLPSVRALIDYLAERF 295 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.137 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 734,001 Number of extensions: 31053 Number of successful extensions: 171 Number of sequences better than 1.0e-08: 34 Number of HSP's gapped: 138 Number of HSP's successfully gapped: 34 Length of query: 313 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 230 Effective length of database: 914,170 Effective search space: 210259100 Effective search space used: 210259100 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)