BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1773.p
         (434 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980972|ref|YP_001352846.1| recombination factor protein Ra...   823   0.0  
gi|152979831|ref|YP_001352001.1| Holliday junction DNA helicase ...    59   4e-10

>gi|152980972|ref|YP_001352846.1| recombination factor protein RarA
           [Janthinobacterium sp. Marseille]
          Length = 433

 Score =  823 bits (2127), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/433 (93%), Positives = 421/433 (97%)

Query: 1   MADLFAQEPAAPLAEALRPKTLDEVIGQSHLLGEGKPLRLAFQSGKPHSMIFWGPPGVGK 60
           M+DLFA+EPAAPLAEALRPKTLDEV+GQSHLLGEGKPLRLAFQSGKPHSMIFWGPPGVGK
Sbjct: 1   MSDLFAREPAAPLAEALRPKTLDEVVGQSHLLGEGKPLRLAFQSGKPHSMIFWGPPGVGK 60

Query: 61  TTLARLTATAFQCEFIALSAVFSGVKDIRAAMEQAEQNLSMGKHTILFVDEIHRFNKSQQ 120
           TTLARLTA+AF+CEFIALSAVFSGVKDIRAAMEQAEQNL+MGKHTILFVDEIHRFNKSQQ
Sbjct: 61  TTLARLTASAFECEFIALSAVFSGVKDIRAAMEQAEQNLAMGKHTILFVDEIHRFNKSQQ 120

Query: 121 DALLPYAESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLTDDELKLLLKRAQEKALG 180
           DALLPYAESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSL+D+ELK LL+RAQEKALG
Sbjct: 121 DALLPYAESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLSDEELKQLLQRAQEKALG 180

Query: 181 ELQFDAQATDTIIGYADGDARRFLNLLEQTETAARTTGTTLVTAEFLQNALTLNSRRFDK 240
           +LQFD QATDTIIGYADGDARRFLNLLEQT TAA TTGT  VTA+FLQNALTLNSRRFDK
Sbjct: 181 DLQFDEQATDTIIGYADGDARRFLNLLEQTNTAANTTGTKKVTADFLQNALTLNSRRFDK 240

Query: 241 GGDNFYDQISALHKSVRGSHPDAALYWLTRMLDGGADPRYLSRRIVRMAWEDIGLADPRA 300
           GGDNFYDQISALHKSVRGSHPDAALYWLTRMLDGGADPRYLSRRIVRMAWEDIGLADPRA
Sbjct: 241 GGDNFYDQISALHKSVRGSHPDAALYWLTRMLDGGADPRYLSRRIVRMAWEDIGLADPRA 300

Query: 301 MQIANDAALTYERLGSPEGELALGQAVIYLAVAAKSNAGYNAYNAARAFVKQDKSREVPV 360
           MQIANDAALTYERLGSPEGELALGQAVIYLAVAAKSNAGYNAYNAARAFVKQDKSREVPV
Sbjct: 301 MQIANDAALTYERLGSPEGELALGQAVIYLAVAAKSNAGYNAYNAARAFVKQDKSREVPV 360

Query: 361 HLRNAPTKLMKELGYGHEYRYAHDEPNAYAAGETYLPEGIAEPGWYQPVPRGLEIKIGEK 420
           HLRNAPTKLMKELGYGHEYRYAHDEPNAYAAGETYLP+ + EPGWYQPVPRGLEIKI EK
Sbjct: 361 HLRNAPTKLMKELGYGHEYRYAHDEPNAYAAGETYLPDDLEEPGWYQPVPRGLEIKIAEK 420

Query: 421 LATLRQWDEEVGK 433
           L  L++WDEE G+
Sbjct: 421 LTLLKKWDEEAGE 433


>gi|152979831|ref|YP_001352001.1| Holliday junction DNA helicase
           RuvB [Janthinobacterium sp. Marseille]
          Length = 352

 Score = 59.3 bits (142), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 59/120 (49%), Gaps = 11/120 (9%)

Query: 13  LAEALRPKTLDEVIGQSHLLGEGKPLRLAFQS---GKPHSMIFWGPPGVGKTTLARLTAT 69
           +  ALRPK LDE +GQ  + G+ +    A +       H+++F GPPG+GKTTLA + A 
Sbjct: 26  IERALRPKQLDEYVGQEKIRGQLEIFITAARQRHEALDHTLLF-GPPGLGKTTLAHIIAR 84

Query: 70  AFQCEFIALSA-VFSGVKDIRAAMEQAEQNLSMGKHTILFVDEIHRFNKSQQDALLPYAE 128
                    S  V     D+ A +   E N       +LF+DEIHR +   ++ L P  E
Sbjct: 85  EMGVNLRQTSGPVLERAGDLAALLTNLEAN------DVLFIDEIHRLSPVVEEILYPALE 138


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 922,910
Number of extensions: 36039
Number of successful extensions: 195
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 2
Length of query: 434
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 348
Effective length of database: 903,079
Effective search space: 314271492
Effective search space used: 314271492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)