BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1771.p
         (243 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981724|ref|YP_001352845.1| outer-membrane lipoprotein carr...   317   6e-88

>gi|152981724|ref|YP_001352845.1| outer-membrane lipoprotein carrier
           protein [Janthinobacterium sp. Marseille]
          Length = 222

 Score =  317 bits (811), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 148/208 (71%), Positives = 177/208 (85%), Gaps = 4/208 (1%)

Query: 35  LSALVVAGAITVTALTPGRASAAALDQFKQFVSSTQSAKGAFTQRMVRVENGKSKVVNTS 94
           +SAL+V  A+ V    P  A AAAL+QFK FV+STQSA+G FTQ++V++E+G SKV N S
Sbjct: 19  VSALLVGAALAV----PRFAHAAALEQFKSFVASTQSARGEFTQQLVKIESGTSKVSNKS 74

Query: 95  SGSFVFSRPGKFIWTYQKPYEQVIQADGEKLFIYDKDLNQVTTKQLGNALGSSPAAILFG 154
           +G+F F+RPGKFIW YQKPYEQ++QADG+KL+IYDKDLNQVT K+LG+ALGSSPAAILFG
Sbjct: 75  TGTFTFARPGKFIWVYQKPYEQLLQADGDKLYIYDKDLNQVTIKKLGDALGSSPAAILFG 134

Query: 155 SNDLEKNFTLKEAGTKDGLEWLQAVPKSRDTTFDSIGIGLKNGTPVAMELHDTFGQVSLL 214
           SNDLEKNFTLKEAGTK+GLEWL+A PK++DTTFD IGIGL+NG P AMEL D+FGQVSLL
Sbjct: 135 SNDLEKNFTLKEAGTKNGLEWLEATPKAKDTTFDHIGIGLRNGVPEAMELRDSFGQVSLL 194

Query: 215 SFDSFEKNPPLKVNSFNFTIPKGADVFN 242
           +F  FEKNPP+  N F F +PKGADVF 
Sbjct: 195 TFTKFEKNPPMPANQFKFVVPKGADVFQ 222


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.129    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 486,419
Number of extensions: 19202
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 162
Effective length of database: 921,564
Effective search space: 149293368
Effective search space used: 149293368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)