BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1769.p
         (317 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980722|ref|YP_001352843.1| thioredoxin reductase (NADPH) [...   572   e-164
gi|152980973|ref|YP_001351728.1| alkyl hydroperoxide reductase s...   134   8e-33

>gi|152980722|ref|YP_001352843.1| thioredoxin reductase (NADPH)
           [Janthinobacterium sp. Marseille]
          Length = 317

 Score =  572 bits (1473), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 273/317 (86%), Positives = 295/317 (93%)

Query: 1   MSTPKHAKVLILGSGPAGYSAAVYAARANLNPVLITGVEQGGQLMTTTDVENWPGDPLGV 60
           MS+ KHA VLILGSGPAGYSAAVYAARANL PVLITGVEQGGQLMTTTDVENWPGDPLGV
Sbjct: 1   MSSAKHAHVLILGSGPAGYSAAVYAARANLKPVLITGVEQGGQLMTTTDVENWPGDPLGV 60

Query: 61  QGPELMQRLQQHAERFNTEIIFDHIHTTKLSERPFRLIGDNGEYTADALIIATGASAQYL 120
           QGPELMQRL QHAERFNTEIIFDHIHTTKL E+P RLIGD GEYT D+LIIATGASAQYL
Sbjct: 61  QGPELMQRLLQHAERFNTEIIFDHIHTTKLDEKPIRLIGDAGEYTCDSLIIATGASAQYL 120

Query: 121 GLPSEQAFMGRGVSACATCDGFFYRGKEVAVIGGGNTAVEEALYLSNIASKVTIVHRRDK 180
           GLPSEQAFMG+GVSACATCDGFFYR +EVAVIGGGNTAVEEALYLSNIA+KVT+VHRRDK
Sbjct: 121 GLPSEQAFMGKGVSACATCDGFFYRNQEVAVIGGGNTAVEEALYLSNIANKVTVVHRRDK 180

Query: 181 FRAEPILIDRLLHKVSEGKIAIQWHSTLDEVVGDDSGVTGIKIKSTQDGAITDIPVHGLF 240
           FRAE ILIDRL+ KV+EGKI ++W+STL+EV GDDSGVTG+ IKST DG+IT I +HG+F
Sbjct: 181 FRAEAILIDRLMAKVAEGKIEVKWNSTLEEVTGDDSGVTGMTIKSTADGSITPIKLHGVF 240

Query: 241 VAIGHKPNTSIFEGQLEMHNGYLKTRTGTEGFATATSIDGVFAAGDVQDHVYRQAITSAG 300
           VAIGHKPNTSIFEGQLEM+NGY+KT+TG EG AT+TS+ GVFAAGDVQDHVYRQAITSAG
Sbjct: 241 VAIGHKPNTSIFEGQLEMNNGYIKTKTGLEGMATSTSVPGVFAAGDVQDHVYRQAITSAG 300

Query: 301 TGCMAALDAQRYLEGLE 317
           TGCMAALDAQRYLE  E
Sbjct: 301 TGCMAALDAQRYLESQE 317


>gi|152980973|ref|YP_001351728.1| alkyl hydroperoxide reductase
           subunit F [Janthinobacterium sp. Marseille]
          Length = 531

 Score =  134 bits (337), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 94/281 (33%), Positives = 148/281 (52%), Gaps = 23/281 (8%)

Query: 41  GGQLMTTTDVENWPGDPLGVQ---GPELMQRLQQHAERFNTEIIFDHIHTTKLSER-PFR 96
           GGQ++ T  +EN+    + VQ   GP+    L+QH   +  +I+  +I T   SE  P +
Sbjct: 246 GGQVLDTLSIENF----VSVQETDGPKFAVALEQHVRSYEVDIM--NIQTA--SELIPGK 297

Query: 97  LI----GDNGEYTADALIIATGASAQYLGLPSEQAFMGRGVSACATCDGFFYRGKEVAVI 152
           LI     D G   +  +I++TGA  + + +P E  +  +GV+ C  CDG  ++GK VAVI
Sbjct: 298 LIEVKLKDGGSLKSKTVILSTGARWKTINVPGENEYRNKGVAYCPHCDGPLFKGKRVAVI 357

Query: 153 GGGNTAVEEALYLSNIASKVTIVHRRDKFRAEPILIDRLLHKVSEGKIAIQWHSTLDEVV 212
           GGGN+ VE A+ L+ I   VT++    + RA+ +L  R L+ ++   +     +T  E+ 
Sbjct: 358 GGGNSGVEAAIDLAGIVGHVTLIEFGAELRADAVL-QRKLNSLANVTVITSAQTT--EIT 414

Query: 213 GDDSGVTGIKIKSTQDGAITDIPVHGLFVAIGHKPNTSIFEGQLEMHNGYLKTRTGTEGF 272
           GD   V G+  K  +   I  + + G+F+ IG  PNT   +G + +   + +    + G 
Sbjct: 415 GDGKRVNGLVYKDRKTEEIKSVELEGVFIQIGLVPNTEWLKGTVALSR-HGEIEVDSHG- 472

Query: 273 ATATSIDGVFAAGDVQDHVYRQAITSAGTGCMAALDAQRYL 313
              TSI GVFAAGDV    Y+Q + + G G  A+L A  YL
Sbjct: 473 --RTSIPGVFAAGDVTTVPYKQIVIAVGEGAKASLSAFDYL 511


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 734,212
Number of extensions: 31096
Number of successful extensions: 115
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 2
Length of query: 317
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 234
Effective length of database: 914,170
Effective search space: 213915780
Effective search space used: 213915780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)