BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1764.p (680 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982902|ref|YP_001352591.1| sigma-54-dependent transcriptio... 206 3e-54 gi|152982343|ref|YP_001355176.1| propionate catabolism operon re... 198 7e-52 gi|152979868|ref|YP_001354671.1| two-components system response ... 182 6e-47 gi|152981133|ref|YP_001355363.1| sigma-54 dependent response reg... 181 1e-46 gi|152980688|ref|YP_001352771.1| nitrogen regulation protein NR(... 171 9e-44 >gi|152982902|ref|YP_001352591.1| sigma-54-dependent transcriptional activator [Janthinobacterium sp. Marseille] Length = 550 Score = 206 bits (525), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 137/333 (41%), Positives = 180/333 (54%), Gaps = 34/333 (10%) Query: 353 PDLQALDTGDARMSAIIGKLRKVIDRDIAVLITGETGTGKEWLAQAIHRESARFRATQTR 412 P + L T M I +KV VLI+GE+G GKE L + IH+ESA Sbjct: 243 PAIAGLITRSPGMQQITALAQKVAKVSATVLISGESGVGKEVLTRLIHKESAHH------ 296 Query: 413 GGAAPFVAVNCSAIPENLIEAELFGYEDGAFTGARRKGAIGKIAQAQGGTLFLDEIGDMP 472 A PFV +NC AIP +L+E+ELFGYE GAFTGA+R+G +G I A GTLFLDEIG++P Sbjct: 297 --AGPFVKINCGAIPRDLLESELFGYEAGAFTGAQRQGKVGMIEVADKGTLFLDEIGELP 354 Query: 473 LALQGRLLRVLQERTVTPLGSQRVIPVEFALVCATNQPLREMAARHSFREDLYYRINGLQ 532 L LQ +LL+VLQ+RT+T LG R I V+ +V ATN+ L+ M FR DL+YR+N + Sbjct: 355 LDLQVKLLQVLQDRTLTRLGGTRPIQVDVRVVAATNRDLQAMVDARQFRSDLFYRLNVVP 414 Query: 533 VKLPALRE-RSDLAQLIERIL--IAEGGALAPRFDEQAQALLQASRWPGNLRQLSNLIRT 589 + +P LRE R D+ LI+ L + L R EQA A L WPGN+R+L N++ Sbjct: 415 LHVPPLRERREDILPLIQHYLDELNAQYDLDKRLSEQALAALLDYDWPGNVRELRNMVER 474 Query: 590 ALAMAEGEAWIGVQHLPDDFLEEAGPLQAGCGMAATTVCEEMRSDCLSIH-DNEWATIER 648 L + E+ I LP E+ SD + A ER Sbjct: 475 -LVVTAPESLIRSDSLP-----------------TLLRSSELESDLARLDIKARSAHFER 516 Query: 649 ALRTHA----GNVSAAAKALGVSRNTLYRRFKS 677 + A GN AAAK L VS++T+ RR K Sbjct: 517 KIVKEAVERYGNTRAAAKHLQVSQSTVVRRLKD 549 >gi|152982343|ref|YP_001355176.1| propionate catabolism operon regulatory protein [Janthinobacterium sp. Marseille] Length = 543 Score = 198 bits (504), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 135/304 (44%), Positives = 173/304 (56%), Gaps = 21/304 (6%) Query: 382 VLITGETGTGKEWLAQAIHRESARFRATQTRGGAAPFVAVNCSAIPENLIEAELFGYEDG 441 VLI GETGTGKE +AQA+HR + +T+ G PFVAVNC A+ E+L+E+ELFGYE+G Sbjct: 248 VLIQGETGTGKELVAQAMHRAHPLMQG-KTQAGH-PFVAVNCGALAESLLESELFGYEEG 305 Query: 442 AFTGARRKGAIGKIAQAQGGTLFLDEIGDMPLALQGRLLRVLQERTVTPLGSQRVIPVEF 501 AFTG+RR G G A GTLFLDEIG+MPL+LQ RLLRVL+ER V +G R IPV Sbjct: 306 AFTGSRRGGRAGLFEAAHRGTLFLDEIGEMPLSLQTRLLRVLEEREVVRVGGTRPIPVSV 365 Query: 502 ALVCATNQPLREMAARHSFREDLYYRINGLQVKLPALRER-SDLAQLIERILIAEGGALA 560 ++ AT+ L FR DL+YR++ L++ LP LRER D+A L E L +L Sbjct: 366 RIISATHCDLDARVREGRFRADLFYRLSVLRLSLPPLRERQEDVAALAEWYLKNALASLD 425 Query: 561 PRFDEQAQA-------LLQASRWPGNLRQLSNLIRTALAMAEGEAWIGVQHLPDDFLEEA 613 R QA LL A RWPGN+R+L NL+ +Q L FL+ Sbjct: 426 VRPPANLQAELLTCLPLLLAYRWPGNVRELRNLMERLALFLAAAP---LQALTPAFLKSI 482 Query: 614 GPLQAGCGMAATTVCEEMRSDCLSIHDNEWATIERALRTHAGNVSAAAKALGVSRNTLYR 673 P +G V E E T+++ L H GN AAA LG+SR TL+R Sbjct: 483 APELSGVIARDAAVSHE--------PPVEAETLQQVLLRHHGNREAAANYLGISRTTLWR 534 Query: 674 RFKS 677 R ++ Sbjct: 535 RLQA 538 >gi|152979868|ref|YP_001354671.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 471 Score = 182 bits (462), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 127/312 (40%), Positives = 169/312 (54%), Gaps = 29/312 (9%) Query: 382 VLITGETGTGKEWLAQAIHRESARFRATQTRGGAAPFVAVNCSAIPENLIEAELFGYEDG 441 V I+GE+G+GKE A+ IH +SAR PFVAVNC AIPE L+EAE FGY G Sbjct: 164 VAISGESGSGKELAARDIHAQSAR--------SDKPFVAVNCGAIPEALMEAEFFGYRKG 215 Query: 442 AFTGARRKGAIGKIAQAQGGTLFLDEIGDMPLALQGRLLRVLQERTVTPLGSQRVIPVEF 501 AFTGA G A GGTL LDE+ D+PLA+Q +LLR +QER V +G+ PV+ Sbjct: 216 AFTGAVDDRD-GFFQAANGGTLLLDEVADLPLAMQVKLLRAIQERRVRKVGATTEEPVDV 274 Query: 502 ALVCATNQPLREMAARHSFREDLYYRINGLQVKLPALRERSDLAQLIERILIAEGGALAP 561 ++ AT+Q L + R +FR+DLYYR+N +++ LP LRER D L+ + ++ A Sbjct: 275 RIISATHQNLHDCVGRGTFRQDLYYRLNVIELNLPPLRERLDDIALLAKAILTRLDAGQA 334 Query: 562 RFDEQA-QALLQASRWPGNLRQLSNLIRTALAMAE------GEAWIGVQHLPDDFLEE-- 612 R A +ALLQ S +PGN+R+L N++ ALA A + + H P E Sbjct: 335 RLTPAALEALLQYS-FPGNVRELENILERALAFANDGVIEVSDLVLKAAHTPKAVAAEMV 393 Query: 613 ---AGPLQAGCG-----MAATTVCEEMRSDCLSIHDNEWATIERALRTHAGNVSAAAKAL 664 A P QA +AAT+ D L D E I RAL N + AA+ L Sbjct: 394 EALAVPEQAMVAPDAKPLAATSDLPGSLPDHLD--DVEREIIRRALSKTQFNRTQAAELL 451 Query: 665 GVSRNTLYRRFK 676 G+S L R + Sbjct: 452 GISFRQLRYRMQ 463 >gi|152981133|ref|YP_001355363.1| sigma-54 dependent response regulator [Janthinobacterium sp. Marseille] Length = 481 Score = 181 bits (459), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 120/322 (37%), Positives = 177/322 (54%), Gaps = 39/322 (12%) Query: 366 SAIIGKLRKVIDR----DIAVLITGETGTGKEWLAQAIHRESARFRATQTRGGAAPFVAV 421 SA + +R+ I R VLITGE+GTGKE A+A+H+ S R FV + Sbjct: 190 SAALEPIREAIKRLATVPSTVLITGESGTGKEIAARAMHKLSNR--------SHNHFVPI 241 Query: 422 NCSAIPENLIEAELFGYEDGAFTGARRKGAIGKIAQAQGGTLFLDEIGDMPLALQGRLLR 481 NC A+ ++IE+ELFG+ GAF+GA G AQGGTLFLDE+ ++PLA+Q +LLR Sbjct: 242 NCGAVAPDIIESELFGHIKGAFSGAASSRE-GLFFYAQGGTLFLDEVAELPLAMQVKLLR 300 Query: 482 VLQERTVTPLGSQRVIPVEFALVCATNQPLREMAARHSFREDLYYRINGLQVKLPALRER 541 VL+E+ + P+G++R IPV+ ++ ATN+ + E FR+DLYYR+N +Q+ +P LRER Sbjct: 301 VLEEKRIRPVGAEREIPVDVRVIAATNRNVEEAVQEGRFRQDLYYRLNVVQLHMPPLRER 360 Query: 542 SD----LAQLIERILIAEGGALAPRFDEQAQALLQASRWPGNLRQLSNLIRTALAMAEGE 597 ++ LA+ R L + G A + D A L WPGN+R+L NLI E Sbjct: 361 TEDIPALAEYFVRQLAQQLGVPAKKPDSALFASLAGYSWPGNVRELRNLI---------E 411 Query: 598 AWIGVQHLPDDFLEEAGPLQAGCGMAATTVCEEMRSDCLSIHDNEWATIERALRTHAGNV 657 W+ + ++ D + A +TT ++ + + E I + L GN Sbjct: 412 RWLILGNISD--------VTAANNTGSTTTNGDVTLEAV-----EKQHILKILAEVGGNK 458 Query: 658 SAAAKALGVSRNTLYRRFKSRG 679 + A + LG+SR TL R+ G Sbjct: 459 TEAGRRLGISRKTLERKCAEWG 480 >gi|152980688|ref|YP_001352771.1| nitrogen regulation protein NR(I) [Janthinobacterium sp. Marseille] Length = 506 Score = 171 bits (434), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 101/250 (40%), Positives = 148/250 (59%), Gaps = 23/250 (9%) Query: 369 IGKLRKVIDRDIAVLITGETGTGKEWLAQAIHRESARFRATQTRGGAAPFVAVNCSAIPE 428 IG+L + ++ VLITGE+G+GKE +A+A+H+ S R + PF+A+N +AIP+ Sbjct: 150 IGRLSQ---SNVTVLITGESGSGKELVARALHKHSPR--------ASQPFIALNTAAIPK 198 Query: 429 NLIEAELFGYEDGAFTGA---RRKGAIGKIAQAQGGTLFLDEIGDMPLALQGRLLRVLQE 485 +L+E+ELFG+E GAFTGA RR G+ QA+ GTLFLDEIGDMP LQ RLLRVL + Sbjct: 199 DLLESELFGHERGAFTGAQATRR----GRFEQAENGTLFLDEIGDMPFDLQTRLLRVLSD 254 Query: 486 RTVTPLGSQRVIPVEFALVCATNQPLREMAARHSFREDLYYRINGLQVKLPALRERSDLA 545 +G + + ++ AT+Q L FREDLY+R+N ++++LP+LRER + Sbjct: 255 GHFYRVGGHQPLKANVRVIAATHQNLEHRVREGLFREDLYHRLNVIRLRLPSLRERREDI 314 Query: 546 QLIERILIAEG----GALAPRFDEQAQALLQASRWPGNLRQLSNLIRTALAMAEGEAWIG 601 ++ R + + G R + A L + PGN+RQL NL MA G+ + Sbjct: 315 PILTRHFLQQSAKQLGVEVKRMSDSAMQFLSSLELPGNVRQLENLCNWITVMAPGQT-VE 373 Query: 602 VQHLPDDFLE 611 + LP + E Sbjct: 374 AKDLPHELTE 383 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.134 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,475,332 Number of extensions: 59103 Number of successful extensions: 247 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 226 Number of HSP's successfully gapped: 7 Length of query: 680 Length of database: 1,221,021 Length adjustment: 90 Effective length of query: 590 Effective length of database: 888,291 Effective search space: 524091690 Effective search space used: 524091690 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)