BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1762.p (506 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979948|ref|YP_001354595.1| succinate-semialdehyde dehydrog... 258 6e-70 gi|152980306|ref|YP_001355332.1| methylmalonate-semialdehyde deh... 150 1e-37 gi|152980627|ref|YP_001353009.1| bifunctional proline dehydrogen... 112 7e-26 >gi|152979948|ref|YP_001354595.1| succinate-semialdehyde dehydrogenase (NADP+) [Janthinobacterium sp. Marseille] Length = 490 Score = 258 bits (659), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 172/501 (34%), Positives = 262/501 (52%), Gaps = 21/501 (4%) Query: 3 LADISKLGVRDPFKQRYDNFIGGKFVPPVKGEYFENISPVIGRAFCEVARSSAEDVELAL 62 ++ + L ++DP R +I G +V F+ +P G +V A++ E A+ Sbjct: 1 MSHSAALQLKDPTILRNHAYINGAWV--TGKASFDVNNPADGSKITDVPNLGAQETEQAI 58 Query: 63 DAAHAAKKAWGKTSPTERANLLLKIADRMEANLELLATAETLDNGKPIRETMAADIPLAI 122 AAHAA AW + ERA ++ D + AN + LA T + GKP+ E+ ++ Sbjct: 59 QAAHAAFPAWAAKTGKERAGIMRIWFDLIIANADDLAALMTAEQGKPLIESRG-EVIYGA 117 Query: 123 DHFRYFAAAVRTQEGSICPID-DDTYAYHFHEPLGVVGQIIPWNFPILMAVWKLAPALAA 181 +FA + G + D +P+GV I PWNFPI M K+APA+AA Sbjct: 118 SFIEWFAEEAKRVSGDVMASTWSDKRTVTIKQPIGVCASITPWNFPIAMITRKVAPAIAA 177 Query: 182 GNCVVLKPAEQTPASIMVLVELIADL-LPPGVLNIVQG---FGVEAGKPLASNKRIAKIA 237 G +V+KPAEQTP S + + EL +PPGV+N+V + GK L S+ + ++ Sbjct: 178 GCTIVIKPAEQTPLSALAIAELAHRAGIPPGVINVVTSDSDQSIAVGKVLCSSPIVRHVS 237 Query: 238 FTGETTTGRLIMQYASQNLIPVTLELGGKSPNIFFADVLDKDDAFFDKALEGFAMFAL-N 296 FTG T GR++M+ + + + LELGG +P I F DDA D A+ G N Sbjct: 238 FTGSTPVGRILMEQCAPTVKKIGLELGGHAPFIVF------DDADLDAAVVGALQSKYRN 291 Query: 297 QGEVCTCPSRVLVQESIYERFIERALKRVAAIKQGNPLDKSTMIGAQASQEQLEKILSYI 356 G+ C C +R V ESIY+ F+++ A IK GN +++ + G + ++K+ ++ Sbjct: 292 AGQTCVCTNRFYVHESIYDTFVQKLGAGAAKIKVGNGVEQGVLQGPLIDAQAVKKVEQHV 351 Query: 357 DIGKQEGAKVLAGGGREELGGDLASGYYVKPTVFQG-NNKMRIFQEEIFGPVVSVTTFKD 415 +GAKV+ GG + LGG Y+ +PTV + M I EE FGPV +V FK Sbjct: 352 SDAVSKGAKVITGGKQHALGG-----YFYEPTVLSNISPDMLIMHEETFGPVAAVIKFKT 406 Query: 416 EEEALAIANDTLYGLGAGLWTRDGTRAFRMGREIQAGRVWTNCYHLYPAHAAFGGYKQSG 475 E+EA+A ANDT +GL + ++RD R +R+ +++ G V N + A FGG KQSG Sbjct: 407 EDEAVAAANDTDFGLASYFYSRDIGRVWRVAEKLEYGMVGINTGLISNEVAPFGGVKQSG 466 Query: 476 IGRENHKMMLDHYQQTKNLLV 496 +GRE K ++ Y + K L + Sbjct: 467 LGREGSKYGIEEYLEIKYLCM 487 >gi|152980306|ref|YP_001355332.1| methylmalonate-semialdehyde dehydrogenase [Janthinobacterium sp. Marseille] Length = 505 Score = 150 bits (380), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 137/499 (27%), Positives = 237/499 (47%), Gaps = 22/499 (4%) Query: 18 RYDNFIGGKFVPPVKGEYFENISPVIGRAFCEVARSSAEDVELALDAAHAAKKAWGKTSP 77 + ++I G+ G + +P G A +V +S DV+ + A AA AW T+P Sbjct: 6 KIKHYINGRLTETAGGRQQDVFNPATGEASAQVVLASDADVQAVVATAKAAAPAWADTAP 65 Query: 78 TERANLLLKIADRMEANLELLATAETLDNGKPIRETMAADIPLAIDHFRYFAAAVRTQEG 137 +RA +L K D +E + + LA A T ++GK + ++ ++ + + + Sbjct: 66 LKRARILFKFKDLIEKHHDDLAAAITREHGKVFSDA-KGEVTRGLEVVEFACGVPQLLKT 124 Query: 138 SICP-IDDDTYAYHFHEPLGVVGQIIPWNFPILMAVWKLAPALAAGNCVVLKPAEQTPAS 196 I ++ +PLGV I P+NFP ++ +W ALA GN +LKP+E+ P+ Sbjct: 125 QFTDNIGGGIDNWNLRQPLGVTAGITPFNFPFMVPMWMAPVALATGNTFILKPSERDPSP 184 Query: 197 IMVLVELIADL-LPPGVLNIVQGFGVEAGKPLASNKRIAKIAFTGETTTGRLIMQYASQ- 254 +++ EL+ LP GV N++QG + A L + + ++F G T I + Sbjct: 185 SLMVAELLQQAGLPDGVFNVLQGDKL-AVDGLLQHPDVKAVSFVGSTPIAEYIYATGAAR 243 Query: 255 --NLIPVTLELGGKSPNIFFADVLDKDDAFFDKALEGFAMFAL-NQGEVCTCPSRVLVQE 311 P+ ++ G + N ++ DA ++A++ A + GE C S + Sbjct: 244 KGGSYPLRVQALGGAKN----HLVVMPDANLEQAVDALIGAAYGSAGERCMAISVAVAVG 299 Query: 312 SIYERFIERALKRVAAIKQGNPLDKSTMIGAQASQEQLEKILSYIDIGKQEGAKVLAGG- 370 I ++ + + RV ++K N ++ +G S KI YID G + GAK+L G Sbjct: 300 DIADKLVAALIPRVKSLKVKNGMEADAEMGPVVSAAHKAKIEGYIDAGVKAGAKLLVDGR 359 Query: 371 GREELGGDLASGYYVKPTVFQG-NNKMRIFQEEIFGPVVSVTTFKDEEEALAIANDTLYG 429 G + G D G+++ +F +M I+QEEIFGPV+ V + AL + N +G Sbjct: 360 GLKVAGHD--KGFFLGGCLFDHVTPEMTIYQEEIFGPVLCVLRVPNFAAALELINRHEFG 417 Query: 430 LGAGLWTRDGTRAFRMGREIQAGRVWTNCYHLYP-AHAAFGGYKQSGIGRENH---KMML 485 G L+T DG A R ++ G V N P A +FGG+K+S G + H + + Sbjct: 418 NGVSLFTSDGNTAREFSRRVEVGMVGINVPIPVPMAWHSFGGWKRSMFG-DTHAYGEEGI 476 Query: 486 DHYQQTKNLLVSYSPKALG 504 Y + K+++ + P+++G Sbjct: 477 KFYTRYKSIMQRW-PESIG 494 >gi|152980627|ref|YP_001353009.1| bifunctional proline dehydrogenase /delta-1-pyrroline-5-carboxylate dehydrogenase [Janthinobacterium sp. Marseille] Length = 1242 Score = 112 bits (279), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 112/423 (26%), Positives = 187/423 (44%), Gaps = 48/423 (11%) Query: 50 VARSSAEDVELALDAAHAAKKAWGKTSPTERANLLLKIADRMEANLELLATAETLDNGKP 109 V ++ A +ELAL A + W ERA +LL+ AD + + L + GK Sbjct: 615 VQQADAAVLELALQHATSGINTWQAKPIAERAAILLQAADLFQQHATELIALLVREAGKT 674 Query: 110 IRETMAADIPLAIDHFRYFAAAVRTQEGSICPIDDDTYAYHFHEPLGVVGQIIPWNFPIL 169 + + ++ AID RY++A A ++PLG+V I PWNFP+ Sbjct: 675 LPNAIG-ELREAIDFLRYYSA--------------QAIASDANQPLGLVACISPWNFPLS 719 Query: 170 MAVWKLAPALAAGNCVVLKPAEQTPASIMVLVELIADL-LPPGVLNIVQGFGVEAGKPLA 228 + +++ ALAA N V+ KPAEQTP V+L+ +P L + G G G L Sbjct: 720 IFTGQVSAALAAANVVLAKPAEQTPLIACRAVQLLHQAGVPENALLFLPGSGETIGAQLV 779 Query: 229 SNKRIAKIAFTGETTTGRLIMQYASQNL------IPVTLELGGKSPNIFFADVL------ 276 ++ R++ + FTG T + I + Q IP+ E GG++ I + L Sbjct: 780 TDPRVSAVVFTGSTQVAQSIQRKLVQRSISEGKDIPLIAETGGQNTMIVDSSALCEQVVR 839 Query: 277 DKDDAFFDKALEGFAMFALNQGEVCTCPSRVLVQESIYERFIERALKRVAAIKQGNPLDK 336 D + FD A G+ C+ + +Q+ I E+ ++ + ++ G P Sbjct: 840 DVISSAFDSA-----------GQRCSALRVLCLQDDIAEQTLQMLHGAMQELRIGRPDHL 888 Query: 337 STMIGAQASQEQLEKILSYIDIGKQEGAKVLAGGGREELGGDLASGYYVKPTVFQGNNKM 396 +T +G E + +YI + G +V +L + +G +V P + + + + Sbjct: 889 ATDVGPVIDAEAQAHLQAYIRQAQAAGKQV------RQLPLPVTNGSFVAPCIIEIAD-I 941 Query: 397 RIFQEEIFGPVVSVTTFK--DEEEALAIANDTLYGLGAGLWTRDGTRAFRMGREIQAGRV 454 Q E+FGPV+ V ++ D + L N T +GL G+ TR + R Q G + Sbjct: 942 NELQREVFGPVLHVLRYRRDDLPQLLMDINSTGFGLTLGIHTRIDETIDYVVRHAQVGNI 1001 Query: 455 WTN 457 + N Sbjct: 1002 YVN 1004 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.137 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,147,669 Number of extensions: 47957 Number of successful extensions: 130 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 117 Number of HSP's successfully gapped: 3 Length of query: 506 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 419 Effective length of database: 899,382 Effective search space: 376841058 Effective search space used: 376841058 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)