BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1761.p
         (112 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981593|ref|YP_001352841.1| nitrogen regulatory protein PII...   201   1e-53
gi|152981568|ref|YP_001351859.1| nitrogen regulatory protein PII...   172   4e-45
gi|152981896|ref|YP_001352098.1| nitrogen regulatory protein PII...    77   3e-16
gi|152983105|ref|YP_001353460.1| nitrogen regulatory protein PII...    76   4e-16

>gi|152981593|ref|YP_001352841.1| nitrogen regulatory protein PII
           [Janthinobacterium sp. Marseille]
          Length = 112

 Score =  201 bits (510), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 103/112 (91%), Positives = 107/112 (95%)

Query: 1   MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60
           MKQVTAIIKPFKLDEVRE+LAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK
Sbjct: 1   MKQVTAIIKPFKLDEVREALAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60

Query: 61  IEVVIDDKVVEQAVDAIIKAARTGKIGDGKIFVQEVEQVIRIRTGETGPDAV 112
           +E V+DD  VEQAVDAIIKAARTGKIGDGKIFVQ VEQVIRIRTGETG +AV
Sbjct: 61  VEAVVDDAGVEQAVDAIIKAARTGKIGDGKIFVQAVEQVIRIRTGETGAEAV 112


>gi|152981568|ref|YP_001351859.1| nitrogen regulatory protein PII
           [Janthinobacterium sp. Marseille]
          Length = 112

 Score =  172 bits (436), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 83/112 (74%), Positives = 100/112 (89%)

Query: 1   MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60
           MK +TAIIKPFKLDEVRE+L+ +GV G+TVTEVKGFGRQKGHTELYRGAEYVVDFLPK K
Sbjct: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60

Query: 61  IEVVIDDKVVEQAVDAIIKAARTGKIGDGKIFVQEVEQVIRIRTGETGPDAV 112
           IE  +DD +V++ ++AI  AARTGKIGDGKIFV +++QV+RIRTGETG +A+
Sbjct: 61  IEAAVDDAIVDRVIEAIETAARTGKIGDGKIFVYDLQQVVRIRTGETGKEAL 112


>gi|152981896|ref|YP_001352098.1| nitrogen regulatory protein PII
          [Janthinobacterium sp. Marseille]
          Length = 107

 Score = 77.0 bits (188), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 65/99 (65%), Gaps = 2/99 (2%)

Query: 1  MKQVTAIIKPFKLDEVRESLAEV-GVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKV 59
          MK++ AII+P +LD+VRE+L +V G  G+T+T V+G      H + +   E ++D+ PKV
Sbjct: 1  MKEIKAIIRPVRLDDVREALGQVAGFPGMTITHVEGCSSPARH-QPHDFKEELLDYSPKV 59

Query: 60 KIEVVIDDKVVEQAVDAIIKAARTGKIGDGKIFVQEVEQ 98
          +I++VIDD+  +   D I + A T  +GDG +++  ++Q
Sbjct: 60 RIDIVIDDQYAKAVYDTIKRVASTKHVGDGIVWMNTIDQ 98


>gi|152983105|ref|YP_001353460.1| nitrogen regulatory protein PII
           [Janthinobacterium sp. Marseille]
          Length = 113

 Score = 76.3 bits (186), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 64/113 (56%), Gaps = 1/113 (0%)

Query: 1   MKQVTAIIKPFKLDEVRESLAEVG-VTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKV 59
           MKQ+ AII+P +LD V  +L  +  + G T+ +V+G  R +G   L+   E+  D     
Sbjct: 1   MKQIIAIIQPHRLDAVEHALQSLSHLPGFTLFQVRGHARGRGVGHLFAADEWNPDMHEHT 60

Query: 60  KIEVVIDDKVVEQAVDAIIKAARTGKIGDGKIFVQEVEQVIRIRTGETGPDAV 112
            + +   D + ++ V+AI  A+ TG  GDG I V  V+ ++RI++GE G  A+
Sbjct: 61  ALLMFCSDDIAQEVVEAIRSASHTGNTGDGLIAVSTVDDIVRIQSGERGNAAL 113


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.138    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 186,956
Number of extensions: 4769
Number of successful extensions: 22
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 4
Length of query: 112
Length of database: 1,221,021
Length adjustment: 71
Effective length of query: 41
Effective length of database: 958,534
Effective search space: 39299894
Effective search space used: 39299894
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 123 (52.0 bits)