BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1760.p
         (685 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979996|ref|YP_001352840.1| NAD synthetase [Janthinobacteri...   140   3e-34

>gi|152979996|ref|YP_001352840.1| NAD synthetase [Janthinobacterium
           sp. Marseille]
          Length = 537

 Score =  140 bits (353), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 157/596 (26%), Positives = 249/596 (41%), Gaps = 114/596 (19%)

Query: 15  RVAVAVPECKVADPGFNAQRTIALAEQAAARGAALVSFPELGLSAYSCEDLFQQRALLDA 74
           +VA+A     V D   N  R    + +AA +GA +V  PEL L  Y  EDL  +++    
Sbjct: 4   KVAIAQINSTVGDLAGNRARIAEFSRRAAEQGADIVLTPELSLVGYPPEDLLLRQSFYAK 63

Query: 75  SLQALQAVLEASLRIPAA-LIVGLPLKVDHQLYNCAVVLHCGRILGVVPKSYLPNYSEFY 133
           + + L A+      +    ++VG P + D Q YN A VL  G++ G   K  LPN + F 
Sbjct: 64  TTETLLALAADLAPLHGLHVVVGHPFEQDGQRYNAASVLLNGKVAGTYCKHDLPNATVFD 123

Query: 134 EARQFSSADCAVTRRVRLLGQEVGFGSHLLFEIANIADFRFHIEICEDVWVPIPPSSFAA 193
           E R F+S D                   L+FE+  +   RF I ICED W P  P+  A 
Sbjct: 124 EKRYFTSVD-----------------EPLVFEVKGV---RFGINICEDTWFPHAPARAAE 163

Query: 194 LAGATVLVNLSASNIVVGKSGYRHQLVSQQSARCLAAYLYSSAGNGESTTDLAWDGQALI 253
                +LV  + S   + K   R  ++         + +Y++   G+   +L +DG + +
Sbjct: 164 AGAQVLLVP-NGSPFHMNKQHLRVDVMHANVTVHGMSLVYANLVGGQD--ELIFDGNSFV 220

Query: 254 CEN-GELLAESERFAEGGHVIYADIDLERLSRERFHQTTFGQSVRRHAEEVRRFEVVAFE 312
            +  GE+ A+ +   E   +I               +   GQ V     +    E ++ E
Sbjct: 221 LDQAGEIRAQLQHCVEDLQII---------------EFQGGQPV-----DGTIVEELSVE 260

Query: 313 VQVPQEQVLPLQRRVARFPYVPANAEQRELRCREVYNIQVQALVQRLSSSGLKKVVIGVS 372
            QV +  VL ++  + +                                +G    +IG+S
Sbjct: 261 AQVYKALVLGVRDYIGK--------------------------------NGFPGALIGMS 288

Query: 373 GGLDSTHALLVCAKAMDKLGLPRTNILAYTMPGFATSSRTLVQAHQLMAQVGCAAQEIDI 432
           GG+DS    L  A A+D LG  +  + A  MP   T+  + V +  ++ +VG    EI I
Sbjct: 289 GGVDSA---LTLAVAVDALGADK--VRAIMMPSPYTAEISWVDSRDMVKRVGVRYDEIGI 343

Query: 433 RPSCEQMLRDLGHPYSRGEPVYDITFENVQAGERTNHLFRLANHHGAIVIGTGDLSELAL 492
               E   R L + +   +   D T EN+QA  R   L  L+N HGAIV+ TG+ SE+A+
Sbjct: 344 NDCFEAFNRTLANEFKGLKQ--DTTEENIQARIRGTILMALSNKHGAIVLTTGNKSEMAV 401

Query: 493 GWCTYGVGDHMSHYNVNASVPKTLITHLVRWVAESGSLELKQPEVLIHILETEISPELV- 551
           G+CT   GD    + V   + KTL+  L  +                  + +++ PE + 
Sbjct: 402 GYCTL-YGDMAGGFAVLKDIAKTLVYRLCAY----------------RNIVSDVIPERIL 444

Query: 552 --PGASEGEPGQRTQDFIGPYELQD--FNLYY--------ILRYGFTPAKVAFLAH 595
               ++E  P Q  QD + PYE+ D    +Y         I+  G+ P  VA + H
Sbjct: 445 TRAPSAELRPDQTDQDSLPPYEVLDAIMQMYMEENQSGVEIIAAGYRPEDVARITH 500


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,522,247
Number of extensions: 61236
Number of successful extensions: 168
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 2
Length of query: 685
Length of database: 1,221,021
Length adjustment: 90
Effective length of query: 595
Effective length of database: 888,291
Effective search space: 528533145
Effective search space used: 528533145
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)