BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1758.p
         (344 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980123|ref|YP_001353939.1| ABC-type Fe3+ transport system,...   479   e-137

>gi|152980123|ref|YP_001353939.1| ABC-type Fe3+ transport system,
           periplasmic component [Janthinobacterium sp. Marseille]
          Length = 345

 Score =  479 bits (1234), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 227/345 (65%), Positives = 271/345 (78%), Gaps = 1/345 (0%)

Query: 1   MFPRQLALGAM-LAAIAASSFAQEKVLNLYSARHYQTDEALYADFTKTTGIKINRVDGDD 59
           M P    L A+ L A  + + AQEKVLNLYSARHYQTDE LY++FTK TGIKINR++ DD
Sbjct: 1   MRPVSTLLAAISLMATVSVAQAQEKVLNLYSARHYQTDELLYSNFTKQTGIKINRIEADD 60

Query: 60  AGILARLKSEGASSPADVILLVDAARLWKAQSEGLFQPVKSKLLDERIPANLHSKEGSEG 119
             +  RLK+EG +SPADVI++VDAAR+W+A+ EG FQPVKS +L+ RIPANL  K+  +G
Sbjct: 61  NALFERLKNEGKNSPADVIVMVDAARIWRAEIEGFFQPVKSTVLNTRIPANLRGKDDGQG 120

Query: 120 TQWFGFSTRARVIVYNKASVKPEDVDTYEALGDPKNKGKLCTRSGSHPYNVSLFGALLEH 179
            +WFGFSTRARVIVYNKASV P DV TYE+L DPKNKGK+CTRSGSHPYN+SL G+++E 
Sbjct: 121 PEWFGFSTRARVIVYNKASVNPADVATYESLADPKNKGKVCTRSGSHPYNLSLIGSMIER 180

Query: 180 DGAAKTEAILKGMVANQARQPVGGDTDQIKAVGSGECGVAISNSYYVARLLRSSKPEDVA 239
           DG   TE   KGMVAN AR P GGDTDQIK V SGECGVAI+NSYY  R+LRS+KPED+A
Sbjct: 181 DGEKATEQWAKGMVANFARPPRGGDTDQIKGVASGECGVAIANSYYYVRMLRSTKPEDIA 240

Query: 240 LMEKVGIVWPNQKTYGAHVNIAGGGVAKHAPHKAEAVQFLEYLASDSAQRYFAEGNNEWP 299
            M+ VG VWPN KT G H NIAGGGVAK+APH+  AV+FLEYLASD AQ YFA+GNNEWP
Sbjct: 241 AMKNVGFVWPNAKTSGTHFNIAGGGVAKNAPHREAAVKFLEYLASDEAQAYFADGNNEWP 300

Query: 300 AVKSVKTDNPALVKMGPFKAEVINVGAVGANQQKVLQMLDRVGYK 344
           AVK V+  N AL  +G +K E +++ A+G NQ    ++LDRVGYK
Sbjct: 301 AVKKVRVKNEALESLGTYKMENVSIAAIGKNQIAAQKILDRVGYK 345


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 771,364
Number of extensions: 31976
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 260
Effective length of database: 910,473
Effective search space: 236722980
Effective search space used: 236722980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 130 (54.7 bits)