BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1754.p
         (124 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982238|ref|YP_001353039.1| hypothetical protein mma_1349 [...   159   6e-41

>gi|152982238|ref|YP_001353039.1| hypothetical protein mma_1349
           [Janthinobacterium sp. Marseille]
          Length = 122

 Score =  159 bits (401), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 68/119 (57%), Positives = 89/119 (74%)

Query: 6   EIFICPASELLERGLGKRFPVRLHGEATTGFVVRHGGVVHGYLNRCAHVPIELDWAEGEF 65
           +I IC ++ L + G G RFP+   GE  TGFVVR+ GVV+GYLNRCAH+PIELDW  GEF
Sbjct: 4   DILICDSAALEDGGTGVRFPLTAGGEDATGFVVRYNGVVYGYLNRCAHIPIELDWNNGEF 63

Query: 66  FESSGLYLMCATHGAVYAPDTGKCVGGPCTGAHLRKIMAVERDGQIYWRPDDIVKPVEA 124
           FE+ G YL+C+THGA+Y P+TG+C GGPC G  LR I+  E+D Q++W+ D+ V+P  A
Sbjct: 64  FETEGRYLICSTHGAIYLPETGRCAGGPCRGGRLRTIVVTEKDNQVFWQADEFVRPARA 122


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.142    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 288,785
Number of extensions: 9911
Number of successful extensions: 23
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 1,221,021
Length adjustment: 73
Effective length of query: 51
Effective length of database: 951,140
Effective search space: 48508140
Effective search space used: 48508140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 124 (52.4 bits)