BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1750.p
         (371 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980414|ref|YP_001353667.1| molybdenum cofactor biosynthesi...   541   e-155

>gi|152980414|ref|YP_001353667.1| molybdenum cofactor biosynthesis
           protein A [Janthinobacterium sp. Marseille]
          Length = 370

 Score =  541 bits (1393), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 257/373 (68%), Positives = 305/373 (81%), Gaps = 5/373 (1%)

Query: 1   MNKRVIPIVAARPAPFASKAGTVTPLAVQPSGWLSDSLGRPLHDLRISVTDRCNFRCVYC 60
           M +++IP+   R   + +K   +      P+G L+D+  RPL DLRIS+TDRCNFRCVYC
Sbjct: 1   MTEKIIPLADLR---YLNKVPVIPARLEAPTGLLADTRARPLQDLRISITDRCNFRCVYC 57

Query: 61  MPKDVFDKQYQFLPHSDLLSFEELARVAAQFVAHGVRKIRLTGGEPLLRKNIETLIALLA 120
           MPK+VFDK Y FLP S LLSFEE+ R+ + FVAHGV KIRLTGGEPLLRKN+E LIA+L+
Sbjct: 58  MPKEVFDKDYAFLPQSSLLSFEEITRITSLFVAHGVEKIRLTGGEPLLRKNVEKLIAMLS 117

Query: 121 ALRAPDGQAIDLTLTTNGTLLKQKAQALKDAGLQRVTVSLDSLDDASFRRMNDVDFPVAR 180
           ALR PDG+ +DLTLTTNG+LL +KAQALKDAGL+RVTVSLD+LDD  F++MNDVDF V+ 
Sbjct: 118 ALRTPDGRELDLTLTTNGSLLARKAQALKDAGLKRVTVSLDALDDKVFKQMNDVDFAVSD 177

Query: 181 VLEGIEAAHAAGLGPIKINMVVKKGVNDDQILPMARYFKGTPTILRFIEYMDVGSSNGWC 240
           VLEGIEAAH  GLGPIKINMVVK G+ND +I+PMAR+FKG+P ILRFIEYMDVG+SNGW 
Sbjct: 178 VLEGIEAAHRVGLGPIKINMVVKGGMNDQEIVPMARHFKGSPYILRFIEYMDVGASNGWK 237

Query: 241 MDEVLPSREVVRRISAELPLQALDPNYTGETAERWRYVDGSGEIGVISSVTQAFCQDCSR 300
           MDEV+PS EV+RRI+AE+PL+A+ PNY  ETA RWRYVDG GEIG ISSVTQAFC DCSR
Sbjct: 238 MDEVIPSAEVIRRINAEMPLEAIAPNYVSETAGRWRYVDGGGEIGAISSVTQAFCSDCSR 297

Query: 301 ARLSTEGKVYTCLFASQGHDLRSIVRNGGSDAEIAGAIAALWGQRGDRYSELRSAMQ--A 358
           ARLSTEGK+YTCLFA+ GHDLR+++R G +D EI+ AIA +W  R DRYSELR+A     
Sbjct: 298 ARLSTEGKLYTCLFATGGHDLRALMRGGNTDEEISTAIAHIWRARTDRYSELRTANTDGL 357

Query: 359 TPARKVEMSYIGG 371
              RKVEMSYIGG
Sbjct: 358 QSERKVEMSYIGG 370


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 864,799
Number of extensions: 35600
Number of successful extensions: 128
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 286
Effective length of database: 906,776
Effective search space: 259337936
Effective search space used: 259337936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)