BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1749.p
         (204 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980569|ref|YP_001353668.1| molybdopterin-guanine dinucleot...   205   1e-54

>gi|152980569|ref|YP_001353668.1| molybdopterin-guanine dinucleotide
           biosynthesis protein A [Janthinobacterium sp. Marseille]
          Length = 198

 Score =  205 bits (522), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 99/195 (50%), Positives = 128/195 (65%)

Query: 7   LTASHITGLVLAGGRGTRMGGVDKGLQLLHGKPLVQHVLERLAPQVGTLAINANRSQLQY 66
           +  S ITGL+LAGGRGTRMG VDKGLQL    P+  HVL RL+PQVG + INAN++   Y
Sbjct: 1   MDTSQITGLILAGGRGTRMGTVDKGLQLFRDAPMALHVLMRLSPQVGYIMINANQNIAPY 60

Query: 67  ARFGYPVWHDLQSDYPGPLAGLQCGLAHCTTPLLASAPCDSPLIPFDLVAHLAEAMAAAG 126
             FG PVW D    + GPLAGLQ GL HC T  L ++PCDSP +P DLV  LA+ +    
Sbjct: 61  EGFGVPVWQDEMQGFAGPLAGLQTGLIHCETDYLVTSPCDSPFLPKDLVERLADGLEQNN 120

Query: 127 AEAAIAVTDDGQRRQRHPVCSLLRSATRSSLDAFLAAGERKMERWFATLACVEVEFPDAR 186
           A+ A+AVT +G  RQ HPV  L++++    L  +L  G RK ++W+++LA  EV F D  
Sbjct: 121 ADIAVAVTGEGATRQAHPVFCLVKASLLPHLTLYLQEGGRKFDKWYSSLAVAEVHFDDED 180

Query: 187 AFSNINTGPELQRLE 201
           AF NINT  +L++ E
Sbjct: 181 AFRNINTLDDLRKYE 195


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 470,720
Number of extensions: 18008
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 125
Effective length of database: 928,958
Effective search space: 116119750
Effective search space used: 116119750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)