BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1748.p (423 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981092|ref|YP_001353669.1| molybdopterin biosynthesis prot... 600 e-173 gi|152980636|ref|YP_001353004.1| molybdopterin biosynthesis prot... 262 3e-71 >gi|152981092|ref|YP_001353669.1| molybdopterin biosynthesis protein MoeA [Janthinobacterium sp. Marseille] Length = 460 Score = 600 bits (1546), Expect = e-173, Method: Compositional matrix adjust. Identities = 284/424 (66%), Positives = 347/424 (81%), Gaps = 1/424 (0%) Query: 1 LHDIVSCISGYDPHAMTVASAQAVIQEFITPIDTVEKLAIRSALSRVLAQDIISRIDVPA 60 L +++SC+S YDP A+ V AQ +I++FI PI+ +EK+AIRSAL RVLA DI+S I+VP+ Sbjct: 37 LSNVISCLSDYDPDALPVPDAQTIIRQFIQPINAIEKVAIRSALDRVLAADIVSPINVPS 96 Query: 61 HDNSAMDGYALRGAEVAAGQQVRLQIIGAVHAGERFSGTVGPGQCVRIMTGAPMPTGCDT 120 HDNSAMDGYA RG+E+ Q ++L+I+G +AG + G+VG G+CVRIMTGA MP CDT Sbjct: 97 HDNSAMDGYAFRGSELQKEQDLQLKIVGTAYAGRAYEGSVGSGECVRIMTGAVMPVECDT 156 Query: 121 VIPQELTTDADAQAVTLPAGRVRPGDNRRLRGEDLALGSVALPRGRVLRPSDIGLLASLG 180 VIPQE T D Q +T+PAG VR GDNRRL+GEDLA+G+ AL +GR+LRP+D+GLLASLG Sbjct: 157 VIPQEFTRDESEQGMTIPAGVVRTGDNRRLKGEDLAIGTPALQKGRILRPADLGLLASLG 216 Query: 181 IAEVPVQRRLRVAFFSTGDELRSVGEPLEPGCVYDSNRYTLHGMLTRLGCDVLDMGVVPD 240 I EVPVQRRLRVAFFSTGDELRS+GE L+ GCVYDSNRYTLHGMLTRLGCD++DMGV+ D Sbjct: 217 IGEVPVQRRLRVAFFSTGDELRSIGETLDEGCVYDSNRYTLHGMLTRLGCDIVDMGVIKD 276 Query: 241 DPAALEAAFRNACEEADAVITSGGVSVGEADYTKQIMASLGEMTFWKIAMRPGRPLAFGR 300 DPAALEAAFR ACE ADA+ITSGGVSVG ADYTKQ+MA LG++TFWKI MRPGRP+AFG+ Sbjct: 277 DPAALEAAFRTACENADAIITSGGVSVGAADYTKQMMAELGDVTFWKIGMRPGRPMAFGK 336 Query: 301 IQSRGRAAYLFGLPGNPVAVTVSFSFFVRDALLRLAGAEP-KPLPRLRAKTATAIRKKAG 359 IQS G+ AYLFGLPGNPVAV V+F F R ALL + GA P LR + AIRK+ G Sbjct: 337 IQSHGKEAYLFGLPGNPVAVMVTFYFLARQALLHMMGASAVDAPPMLRVVSKAAIRKRPG 396 Query: 360 RTEYQRGILAPDDHGTWQVRLTGMQGSGILRSMSDANCIIELEHERGDVAAGEEVAVVLF 419 RTEYQRGIL+ + G +VR+TG QGSG+LRSMS+ANC++ LEH+R +V AG+ V V+LF Sbjct: 397 RTEYQRGILSLNSDGVQEVRITGSQGSGVLRSMSEANCMVVLEHDRAEVKAGDLVNVILF 456 Query: 420 DGLV 423 +GL+ Sbjct: 457 EGLI 460 >gi|152980636|ref|YP_001353004.1| molybdopterin biosynthesis protein [Janthinobacterium sp. Marseille] Length = 413 Score = 262 bits (669), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 174/421 (41%), Positives = 240/421 (57%), Gaps = 29/421 (6%) Query: 16 MTVASAQAVIQEFITPIDTVEKLAIRSALSRVLAQDIISRIDVPAHDNSAMDGYALRGAE 75 ++VA A A + I E LA A RVLA S+++VP DN++MDGYA+R A+ Sbjct: 8 LSVAEALAFLLSSAKKITETETLATLDANGRVLAVAQESQLNVPPVDNTSMDGYAVRAAD 67 Query: 76 VAAGQQV-RL-QIIGAVHAGERFSGTVGPGQCVRIMTGAPMPTGCDTVIPQEL---TTDA 130 +G+ V R+ Q I A H G+ G RI TGA +P G D V+ QE+ + A Sbjct: 68 CVSGEAVLRVSQRIPAGHVGQPLEA----GCAARIFTGAMIPQGADAVVMQEVCVASKGA 123 Query: 131 DAQAVTLPAGRVRPGDNRRLR--GEDLALGSVALPRGRVLRPSDIGLLASLGIAEVPVQR 188 D VT+ + P +R GED+ GS L G+ LR ++GL AS+G+A++PV R Sbjct: 124 DGDLVTV---KHNPASGEWIRRAGEDIRAGSTILTAGQRLRAQELGLAASVGLAQIPVVR 180 Query: 189 RLRVAFFSTGDELRSVGEPLEPGCVYDSNRYTLHGMLTRLGCDVLDMGVVPDDPAALEAA 248 +LRVA F TGDEL GE L+PG +Y+SNR+TL G+L LGC++ D G+VPD AA Sbjct: 181 KLRVAVFFTGDELAMPGEVLKPGAIYNSNRFTLRGLLENLGCEISDFGIVPDTLAATRDT 240 Query: 249 FRNACEEADAVITSGGVSVGEADYTKQIMASLGEMTFWKIAMRPGRPLAFGRIQSRGR-- 306 R A E D +ITSGGVSVGE D+ K + + G + W+IA++PG+PLAFG + + Sbjct: 241 LRRAAAENDLIITSGGVSVGEEDHIKPAVEAEGHLNMWQIAVKPGKPLAFGEVNRSAKDG 300 Query: 307 AAYLFGLPGNPVAVTVSFSFFVRDALLRLAGAE---PKPLPRLRAKTATAIRKKAGRTEY 363 AY GLPGNPV+ V+F FVR +LRL G E PK P +RA + K R E+ Sbjct: 301 TAYFLGLPGNPVSSFVTFMLFVRPFILRLQGVENVAPKAYP-MRAD--FNLNKADKRNEF 357 Query: 364 QRGILAPDDHGTWQVRLTGMQGSGILRSMSDANCIIELEHERGD-VAAGEEVAVVLFDGL 422 R + +D G + L Q SG+L S + +I +H G +AAG+ V + F L Sbjct: 358 LRAKI--NDQGG--LDLFPNQSSGVLTSTVWGDGLI--DHPPGKTIAAGDTVRFISFSDL 411 Query: 423 V 423 + Sbjct: 412 M 412 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 972,710 Number of extensions: 41281 Number of successful extensions: 130 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 125 Number of HSP's successfully gapped: 2 Length of query: 423 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 337 Effective length of database: 903,079 Effective search space: 304337623 Effective search space used: 304337623 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)