BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1747.p
         (488 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981045|ref|YP_001353034.1| hypothetical protein mma_1344 [...   716   0.0  

>gi|152981045|ref|YP_001353034.1| hypothetical protein mma_1344
           [Janthinobacterium sp. Marseille]
          Length = 493

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/475 (78%), Positives = 416/475 (87%), Gaps = 1/475 (0%)

Query: 1   MILAGLIVVGLVLQLLILLRSGQRHDAGGEMEEALLQLKQELQRHQQDTGERIERELRSQ 60
           +ILA L VV + LQ+++LLR+ +  D   ++   L QL+ E+Q HQQ   ERIERELR Q
Sbjct: 7   IILAVLAVVVIALQVVLLLRA-RGTDLASQITPQLKQLQNEVQAHQQQGSERIERELREQ 65

Query: 61  VQISAQGTRQELGANFAQLQQTLATQMSSVATLQNKQIDGFAQQLVKLNETNAQQLDHMR 120
           VQ +AQ TRQELG+NF Q QQ L+TQM+SVATLQN QID FAQQL KLNE NAQQL+ MR
Sbjct: 66  VQSTAQSTRQELGSNFTQFQQALSTQMTSVATLQNNQIDSFAQQLAKLNEANAQQLEAMR 125

Query: 121 QSITLQAQVNREEQAVSLKRFGDTLNQQLSALTESNAQRMAEVRATLEAKIKDLQNDNAQ 180
            +I  QAQ  REEQA +LK FGDTLNQ L+ LTESNAQRMAEVRATLEAKIKDLQ DN  
Sbjct: 126 LAIGAQAQAGREEQATALKHFGDTLNQTLTTLTESNAQRMAEVRATLEAKIKDLQTDNGT 185

Query: 181 KLEEMRKTVDEKLHATLEQRLGESFKLVSDRLDKVHQGLGEMQQLATGVGDLKRVLTNVK 240
           +LEEMRKTVDEKLHATLEQRLGESFKLVSDRL+KVHQGLGEMQQLA GVGDLKRVLTNVK
Sbjct: 186 RLEEMRKTVDEKLHATLEQRLGESFKLVSDRLEKVHQGLGEMQQLAIGVGDLKRVLTNVK 245

Query: 241 TRGTWGEVQLEILLEQMLTPDQYAKNVETVPASGERVEFAIRLPGAKEDGGQVWMPIDAK 300
           TRGTWGEVQLE+LLEQ+LTPDQYAKNVETVP +GERVEFAI+LPG  +    +WMPIDAK
Sbjct: 246 TRGTWGEVQLEMLLEQVLTPDQYAKNVETVPGTGERVEFAIKLPGTDDGQTPIWMPIDAK 305

Query: 301 FPKEQYERLVDAAERADAEGVATAGRELERAVRGEAKTIAEKYLSPPLTTDFAILFLPTE 360
           FPKEQYERL +AA+RADA+GV+ AGRELER VR EAK IAEKYLSPPLTTDFAILFLPTE
Sbjct: 306 FPKEQYERLAEAADRADADGVSLAGRELERVVRFEAKKIAEKYLSPPLTTDFAILFLPTE 365

Query: 361 GLYAEVMRRPGLSDELQRTHRVTIAGPSTLSALLNSLQMGFRTLALEKRSSEVWQVLGAV 420
           GLYAEVMRRPGL+D+LQRTHRV+IAGPSTLSALLNSLQMGFRTLALEKRSSEVWQVLGAV
Sbjct: 366 GLYAEVMRRPGLADDLQRTHRVSIAGPSTLSALLNSLQMGFRTLALEKRSSEVWQVLGAV 425

Query: 421 KTEFGKFGEVLASTKSALERVAKNIDQAETRTRQMTRKLKAVEALPVENAQKLLG 475
           KTEFGKFG+VLA+TK+ LER AKNI+QAETR+RQMTRKLK+VEALP E AQ+LLG
Sbjct: 426 KTEFGKFGDVLAATKATLERAAKNIEQAETRSRQMTRKLKSVEALPSETAQQLLG 480


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.314    0.129    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 897,158
Number of extensions: 34812
Number of successful extensions: 129
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 401
Effective length of database: 899,382
Effective search space: 360652182
Effective search space used: 360652182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 131 (55.1 bits)