BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1741.p
         (219 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981789|ref|YP_001352259.1| homoserine/homoserine lactone e...   254   3e-69

>gi|152981789|ref|YP_001352259.1| homoserine/homoserine lactone
           efflux protein [Janthinobacterium sp. Marseille]
          Length = 214

 Score =  254 bits (649), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 127/216 (58%), Positives = 159/216 (73%), Gaps = 6/216 (2%)

Query: 1   MAYQTWITFFFAACVIAISPGSGAVLSMSHGLNYGVRRTSATILGLEVALVVVLVIAGAG 60
           M    W+TF  AA +IAI+PGSGA+LSMSHGL+YGVR+T+A+ILGL++ L+ +L +AGAG
Sbjct: 1   MTLSLWLTFLIAAILIAITPGSGAILSMSHGLSYGVRKTTASILGLQLGLIFLLTVAGAG 60

Query: 61  VGSLLVASEPAFNAVKIAGALYLIYLGFSQWRAPVPTEQEGEAIDAANAVARAQRGQAWW 120
           VGSLL+ASE AFN VK  GA YLIYLG SQWRA V    E +A  A   V   ++     
Sbjct: 61  VGSLLLASEMAFNIVKTIGAFYLIYLGLSQWRAKVVLAPEMQAQHARTIVPTFKK----- 115

Query: 121 QRCITGFLTNATNPKGIVFMVAVLPQFIDHERPLGLQLLVLGLTMVAVDVVVMHGYAFAA 180
            R + G LTN TNPKG++FMVAVLPQFI  + PL  QLL+LG+T+  +D++VMH YAFAA
Sbjct: 116 -RFLHGLLTNVTNPKGVIFMVAVLPQFIVKDAPLLPQLLILGVTICVIDIIVMHAYAFAA 174

Query: 181 SRLQRFFRSQKALKAQNRFFGGVLMLVGAGLFFVKR 216
           S +QRFFR   A+K QNRFFG + + +G GLFFVKR
Sbjct: 175 SSMQRFFRDATAVKKQNRFFGSLFIAIGTGLFFVKR 210


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.328    0.139    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 418,242
Number of extensions: 12842
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 2
Length of query: 219
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 139
Effective length of database: 925,261
Effective search space: 128611279
Effective search space used: 128611279
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 127 (53.5 bits)